miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20438 5' -58.4 NC_004688.1 + 23067 1.12 0.00063
Target:  5'- cAGCGUGCCAAACCCUGCGCCAGCAGCa -3'
miRNA:   3'- -UCGCACGGUUUGGGACGCGGUCGUCG- -5'
20438 5' -58.4 NC_004688.1 + 1853 0.75 0.255756
Target:  5'- --gGUGCCAGGCCCgcgguucGCGCCaagcuugguGGCGGCg -3'
miRNA:   3'- ucgCACGGUUUGGGa------CGCGG---------UCGUCG- -5'
20438 5' -58.4 NC_004688.1 + 73499 0.73 0.302461
Target:  5'- uGGUGcacGCCGcGCCCUGCGgCggGGCAGCa -3'
miRNA:   3'- -UCGCa--CGGUuUGGGACGCgG--UCGUCG- -5'
20438 5' -58.4 NC_004688.1 + 58530 0.73 0.306756
Target:  5'- cGGCGcaugGCCAuccuguuccugguGCCCUGCGCC-GCAGg -3'
miRNA:   3'- -UCGCa---CGGUu------------UGGGACGCGGuCGUCg -5'
20438 5' -58.4 NC_004688.1 + 26368 0.73 0.319922
Target:  5'- cGGCcaucGCCGAGCCC-GCGCCcauggcgcccuggauGGCAGCg -3'
miRNA:   3'- -UCGca--CGGUUUGGGaCGCGG---------------UCGUCG- -5'
20438 5' -58.4 NC_004688.1 + 9914 0.71 0.423625
Target:  5'- --aGUGCCAgGGCgUUGCGCCAGauaGGCg -3'
miRNA:   3'- ucgCACGGU-UUGgGACGCGGUCg--UCG- -5'
20438 5' -58.4 NC_004688.1 + 17122 0.7 0.440928
Target:  5'- cGGCGUccacgcgcagcaGCCAAucgcccgGCUCUGCGaCCAGCAucGCg -3'
miRNA:   3'- -UCGCA------------CGGUU-------UGGGACGC-GGUCGU--CG- -5'
20438 5' -58.4 NC_004688.1 + 6979 0.7 0.47958
Target:  5'- uGGCGUGCUucAGCa--GCGcCCAGCGGCc -3'
miRNA:   3'- -UCGCACGGu-UUGggaCGC-GGUCGUCG- -5'
20438 5' -58.4 NC_004688.1 + 24564 0.7 0.489258
Target:  5'- cGGCGcGCCGAACcuucuCCUGCGCauccgcgaCAGCAcGCu -3'
miRNA:   3'- -UCGCaCGGUUUG-----GGACGCG--------GUCGU-CG- -5'
20438 5' -58.4 NC_004688.1 + 89801 0.69 0.499028
Target:  5'- cAGCGaUGUCGGGgCC-GCGCCAGCcgggaGGCu -3'
miRNA:   3'- -UCGC-ACGGUUUgGGaCGCGGUCG-----UCG- -5'
20438 5' -58.4 NC_004688.1 + 44500 0.69 0.507893
Target:  5'- uGGCcUGCaCAAGCggaaccaCCUGCGaCAGCGGCa -3'
miRNA:   3'- -UCGcACG-GUUUG-------GGACGCgGUCGUCG- -5'
20438 5' -58.4 NC_004688.1 + 5246 0.69 0.518819
Target:  5'- uGGUGUcGCCGucGCCCa--GCCAGUAGCc -3'
miRNA:   3'- -UCGCA-CGGUu-UGGGacgCGGUCGUCG- -5'
20438 5' -58.4 NC_004688.1 + 110791 0.69 0.518819
Target:  5'- cGUGUGCgAAugUUUGCcacagcucgGCCGGCGGCc -3'
miRNA:   3'- uCGCACGgUUugGGACG---------CGGUCGUCG- -5'
20438 5' -58.4 NC_004688.1 + 3112 0.69 0.518819
Target:  5'- cAGCGgGCCAcggAGCCauCUGCGgaAGCGGCg -3'
miRNA:   3'- -UCGCaCGGU---UUGG--GACGCggUCGUCG- -5'
20438 5' -58.4 NC_004688.1 + 48669 0.69 0.52883
Target:  5'- uGCGUGCCAcGCuccuCCUGUccaGUCuGGCAGCg -3'
miRNA:   3'- uCGCACGGUuUG----GGACG---CGG-UCGUCG- -5'
20438 5' -58.4 NC_004688.1 + 4599 0.69 0.538913
Target:  5'- cGGCG-GCCAGGucaaucgcuUCCUGC-CCGGCAGa -3'
miRNA:   3'- -UCGCaCGGUUU---------GGGACGcGGUCGUCg -5'
20438 5' -58.4 NC_004688.1 + 43736 0.69 0.538913
Target:  5'- gGGCcUGCCugcguAGCCCgcGgGCCAGgGGCg -3'
miRNA:   3'- -UCGcACGGu----UUGGGa-CgCGGUCgUCG- -5'
20438 5' -58.4 NC_004688.1 + 59719 0.69 0.538913
Target:  5'- uGCGaugGCCcuACCCUGCGCaAGgAGUu -3'
miRNA:   3'- uCGCa--CGGuuUGGGACGCGgUCgUCG- -5'
20438 5' -58.4 NC_004688.1 + 58376 0.68 0.558242
Target:  5'- uGGCGgGCUucGCCCUGgcggcCGCCuauucguGGCAGCa -3'
miRNA:   3'- -UCGCaCGGuuUGGGAC-----GCGG-------UCGUCG- -5'
20438 5' -58.4 NC_004688.1 + 37236 0.68 0.559265
Target:  5'- cGUG-GCUucauucGCCCcugugGUGCCAGCAGCu -3'
miRNA:   3'- uCGCaCGGuu----UGGGa----CGCGGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.