miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2044 3' -56.1 NC_001347.2 + 155746 0.66 0.954065
Target:  5'- --cGCGGGucagaaguacGCCGCCuuccucaaguacguGC-ACGGCGACu -3'
miRNA:   3'- caaUGCCC----------UGGCGGu-------------CGaUGCCGUUG- -5'
2044 3' -56.1 NC_001347.2 + 172534 0.66 0.952504
Target:  5'- --cGgGGGcCCGCUGGCU-CGGCGcgGCu -3'
miRNA:   3'- caaUgCCCuGGCGGUCGAuGCCGU--UG- -5'
2044 3' -56.1 NC_001347.2 + 75031 0.66 0.952504
Target:  5'- cGUUACGGcGAUUGUaGGUaacgaGCGGCAACg -3'
miRNA:   3'- -CAAUGCC-CUGGCGgUCGa----UGCCGUUG- -5'
2044 3' -56.1 NC_001347.2 + 156783 0.66 0.952504
Target:  5'- --gGCGGGAgaagggaaGgCGGCaGCGGCAGCg -3'
miRNA:   3'- caaUGCCCUgg------CgGUCGaUGCCGUUG- -5'
2044 3' -56.1 NC_001347.2 + 144510 0.66 0.952108
Target:  5'- gGggACGGGuacgacuuugaugACgGCCAGCaACaGCAGCa -3'
miRNA:   3'- -CaaUGCCC-------------UGgCGGUCGaUGcCGUUG- -5'
2044 3' -56.1 NC_001347.2 + 109506 0.66 0.948448
Target:  5'- --cGCGGG-CCGCaaacgcaaauCAGCauccuCGGCGACg -3'
miRNA:   3'- caaUGCCCuGGCG----------GUCGau---GCCGUUG- -5'
2044 3' -56.1 NC_001347.2 + 89836 0.66 0.944169
Target:  5'- --cACGGGuuCGUaaaagAGUUugGGCAACa -3'
miRNA:   3'- caaUGCCCugGCGg----UCGAugCCGUUG- -5'
2044 3' -56.1 NC_001347.2 + 188185 0.66 0.944169
Target:  5'- cGUU-CGGcGGCCGUCGGCUAUuaCGACg -3'
miRNA:   3'- -CAAuGCC-CUGGCGGUCGAUGccGUUG- -5'
2044 3' -56.1 NC_001347.2 + 146391 0.66 0.941493
Target:  5'- cGUUACGuGACgGUcaaggaucaguggcaCAGCcGCGGCAGCa -3'
miRNA:   3'- -CAAUGCcCUGgCG---------------GUCGaUGCCGUUG- -5'
2044 3' -56.1 NC_001347.2 + 62003 0.66 0.934931
Target:  5'- -aUGCGGGuCCGCguGCUGCuucaGgAACa -3'
miRNA:   3'- caAUGCCCuGGCGguCGAUGc---CgUUG- -5'
2044 3' -56.1 NC_001347.2 + 155177 0.66 0.934931
Target:  5'- --cGCGGGugCGCguGCcAUaGCAGCu -3'
miRNA:   3'- caaUGCCCugGCGguCGaUGcCGUUG- -5'
2044 3' -56.1 NC_001347.2 + 184961 0.66 0.934931
Target:  5'- --gGCGuGGGCgGCUcgcggagacugGGCUGCaGGCGGCa -3'
miRNA:   3'- caaUGC-CCUGgCGG-----------UCGAUG-CCGUUG- -5'
2044 3' -56.1 NC_001347.2 + 191993 0.66 0.934931
Target:  5'- --gGCGGcGACgGaCGGCgGCGGUAACa -3'
miRNA:   3'- caaUGCC-CUGgCgGUCGaUGCCGUUG- -5'
2044 3' -56.1 NC_001347.2 + 15590 0.66 0.934445
Target:  5'- -aUACGGGcCCG-CGGCUGCauugccuGGUGACg -3'
miRNA:   3'- caAUGCCCuGGCgGUCGAUG-------CCGUUG- -5'
2044 3' -56.1 NC_001347.2 + 110489 0.66 0.933467
Target:  5'- cGUUAgcGGACUgcaccucuuucagaGCCAGCggcGCGGCGGCg -3'
miRNA:   3'- -CAAUgcCCUGG--------------CGGUCGa--UGCCGUUG- -5'
2044 3' -56.1 NC_001347.2 + 30885 0.67 0.92997
Target:  5'- --cACGGGguacucgugGCCGCCuGGCUugugcgUGGCAACu -3'
miRNA:   3'- caaUGCCC---------UGGCGG-UCGAu-----GCCGUUG- -5'
2044 3' -56.1 NC_001347.2 + 21191 0.67 0.92997
Target:  5'- --aACGGGacuuugacaGCCGCCAGUacgACGGgGAa -3'
miRNA:   3'- caaUGCCC---------UGGCGGUCGa--UGCCgUUg -5'
2044 3' -56.1 NC_001347.2 + 147902 0.67 0.92997
Target:  5'- ---uUGGGGCCGUgGGUggcGCGGUGGCc -3'
miRNA:   3'- caauGCCCUGGCGgUCGa--UGCCGUUG- -5'
2044 3' -56.1 NC_001347.2 + 37999 0.67 0.92997
Target:  5'- ---uCGGGcagcaGCCGCCGcGCggccuCGGCGGCg -3'
miRNA:   3'- caauGCCC-----UGGCGGU-CGau---GCCGUUG- -5'
2044 3' -56.1 NC_001347.2 + 47062 0.67 0.92997
Target:  5'- --gACGuuaACUGCuaCAGCUGCGGCGGCg -3'
miRNA:   3'- caaUGCcc-UGGCG--GUCGAUGCCGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.