miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20440 5' -58.7 NC_004688.1 + 39875 0.66 0.734644
Target:  5'- -cGGCGCCUGCuCCGCCGggUCCGGugGCg- -3'
miRNA:   3'- ucCUGUGGACG-GGUGGU--GGGCU--UGac -5'
20440 5' -58.7 NC_004688.1 + 36816 0.66 0.734644
Target:  5'- -cGACAgC-GCCCAcCCACCCGAAg-- -3'
miRNA:   3'- ucCUGUgGaCGGGU-GGUGGGCUUgac -5'
20440 5' -58.7 NC_004688.1 + 3988 0.66 0.724743
Target:  5'- cGGcguGCACgCgGCCCACCACCCu-AUUGc -3'
miRNA:   3'- uCC---UGUG-GaCGGGUGGUGGGcuUGAC- -5'
20440 5' -58.7 NC_004688.1 + 41625 0.66 0.724743
Target:  5'- uGGGAguUg-GCgCCGCCGCCCGGACc- -3'
miRNA:   3'- -UCCUguGgaCG-GGUGGUGGGCUUGac -5'
20440 5' -58.7 NC_004688.1 + 687 0.66 0.714761
Target:  5'- aGGGGCugCcGUCCacaugaGCCGCCCGGAg-- -3'
miRNA:   3'- -UCCUGugGaCGGG------UGGUGGGCUUgac -5'
20440 5' -58.7 NC_004688.1 + 26131 0.66 0.704708
Target:  5'- -cGcCACCUGCcgcuCCACCGCCCGcGGCg- -3'
miRNA:   3'- ucCuGUGGACG----GGUGGUGGGC-UUGac -5'
20440 5' -58.7 NC_004688.1 + 67813 0.66 0.694592
Target:  5'- uGGccuCGCgCUGCuCCAUCACUgCGAGCUGg -3'
miRNA:   3'- uCCu--GUG-GACG-GGUGGUGG-GCUUGAC- -5'
20440 5' -58.7 NC_004688.1 + 97995 0.67 0.674211
Target:  5'- -cGACGCaCUGCCCccgguaGCCAUCCuuGCUGu -3'
miRNA:   3'- ucCUGUG-GACGGG------UGGUGGGcuUGAC- -5'
20440 5' -58.7 NC_004688.1 + 26083 0.67 0.663964
Target:  5'- cGGGuagacCACCgccaGCCgCACCGCCCGcAGCa- -3'
miRNA:   3'- -UCCu----GUGGa---CGG-GUGGUGGGC-UUGac -5'
20440 5' -58.7 NC_004688.1 + 4717 0.67 0.653691
Target:  5'- gAGGAgGCC-GCCCACUucuucacccagGCgCCGGACUc -3'
miRNA:   3'- -UCCUgUGGaCGGGUGG-----------UG-GGCUUGAc -5'
20440 5' -58.7 NC_004688.1 + 42125 0.67 0.623831
Target:  5'- uGGACGCCgagcuuuucgaucucGUuuuUCACCGCCCaGAACUGg -3'
miRNA:   3'- uCCUGUGGa--------------CG---GGUGGUGGG-CUUGAC- -5'
20440 5' -58.7 NC_004688.1 + 48760 0.68 0.591974
Target:  5'- cGGGGgGCCUcGUCCGCCGCcaucgCCGAgaaGCUGc -3'
miRNA:   3'- -UCCUgUGGA-CGGGUGGUG-----GGCU---UGAC- -5'
20440 5' -58.7 NC_004688.1 + 100161 0.68 0.581748
Target:  5'- aAGGuCACCgGCCgCACCGauggaCCGAGCg- -3'
miRNA:   3'- -UCCuGUGGaCGG-GUGGUg----GGCUUGac -5'
20440 5' -58.7 NC_004688.1 + 57562 0.68 0.561413
Target:  5'- aAGGGCGCCcGucggcaguaaaCCCAuCCACCUGAGCg- -3'
miRNA:   3'- -UCCUGUGGaC-----------GGGU-GGUGGGCUUGac -5'
20440 5' -58.7 NC_004688.1 + 26311 0.69 0.531298
Target:  5'- -cGACGCCgaGgCCGCCGCCCugGGGCUGc -3'
miRNA:   3'- ucCUGUGGa-CgGGUGGUGGG--CUUGAC- -5'
20440 5' -58.7 NC_004688.1 + 12631 0.69 0.511549
Target:  5'- uGGGCAgCgUGUCCACCGCgCGAcACUGc -3'
miRNA:   3'- uCCUGU-GgACGGGUGGUGgGCU-UGAC- -5'
20440 5' -58.7 NC_004688.1 + 15869 0.69 0.510569
Target:  5'- cAGGGCAuCCUcGCCCGCCGCaucaaacuugccgCCGGGCc- -3'
miRNA:   3'- -UCCUGU-GGA-CGGGUGGUG-------------GGCUUGac -5'
20440 5' -58.7 NC_004688.1 + 91558 0.7 0.501788
Target:  5'- uGGGACAUCUucGCCCACCAgUCGcaGACg- -3'
miRNA:   3'- -UCCUGUGGA--CGGGUGGUgGGC--UUGac -5'
20440 5' -58.7 NC_004688.1 + 26002 0.7 0.47302
Target:  5'- cGGucCGCCUGCCaUACC-CCCGGGCa- -3'
miRNA:   3'- uCCu-GUGGACGG-GUGGuGGGCUUGac -5'
20440 5' -58.7 NC_004688.1 + 38910 0.73 0.343536
Target:  5'- cGGACACCUGCgUACUGCuaCCGGACa- -3'
miRNA:   3'- uCCUGUGGACGgGUGGUG--GGCUUGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.