miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20441 3' -58.9 NC_004688.1 + 48199 0.66 0.776915
Target:  5'- ---cGugCUggaugGCCGCCACCCGc-CCGGg -3'
miRNA:   3'- cccaCugGG-----UGGCGGUGGGUaaGGCC- -5'
20441 3' -58.9 NC_004688.1 + 58373 0.66 0.776915
Target:  5'- cGGGcuucGCCCugGCgGCCGCCUAUUCgUGGc -3'
miRNA:   3'- -CCCac--UGGG--UGgCGGUGGGUAAG-GCC- -5'
20441 3' -58.9 NC_004688.1 + 73277 0.66 0.767681
Target:  5'- cGGGgaucauGCCC-CUGCCGCCC--UCgCGGa -3'
miRNA:   3'- -CCCac----UGGGuGGCGGUGGGuaAG-GCC- -5'
20441 3' -58.9 NC_004688.1 + 67247 0.66 0.767681
Target:  5'- uGGGcGccgucaugagauGCCCACCGCuuCACCCcaagUCCGa -3'
miRNA:   3'- -CCCaC------------UGGGUGGCG--GUGGGua--AGGCc -5'
20441 3' -58.9 NC_004688.1 + 58117 0.66 0.75833
Target:  5'- cGGGcgcGGCCC-CCGCCACgCUAaUCCc- -3'
miRNA:   3'- -CCCa--CUGGGuGGCGGUG-GGUaAGGcc -5'
20441 3' -58.9 NC_004688.1 + 91048 0.66 0.75833
Target:  5'- aGGUGAUCCACC--UugCCggUCUGGa -3'
miRNA:   3'- cCCACUGGGUGGcgGugGGuaAGGCC- -5'
20441 3' -58.9 NC_004688.1 + 36147 0.66 0.75833
Target:  5'- -uGUGGCUgGCCGCC-CCCAUcCCc- -3'
miRNA:   3'- ccCACUGGgUGGCGGuGGGUAaGGcc -5'
20441 3' -58.9 NC_004688.1 + 85524 0.66 0.757388
Target:  5'- uGGUGAUgUagugggaGCCGCCGCCCcacgCCGa -3'
miRNA:   3'- cCCACUGgG-------UGGCGGUGGGuaa-GGCc -5'
20441 3' -58.9 NC_004688.1 + 16309 0.66 0.74887
Target:  5'- aGGUGGCCgA-CGCCACCC---CCGa -3'
miRNA:   3'- cCCACUGGgUgGCGGUGGGuaaGGCc -5'
20441 3' -58.9 NC_004688.1 + 93455 0.66 0.74887
Target:  5'- cGGGUGcaugGCCuCACCGCuCACCagga-CGGu -3'
miRNA:   3'- -CCCAC----UGG-GUGGCG-GUGGguaagGCC- -5'
20441 3' -58.9 NC_004688.1 + 41625 0.66 0.739311
Target:  5'- uGGGaguUGGC--GCCGCCGCCCGgaCCGu -3'
miRNA:   3'- -CCC---ACUGggUGGCGGUGGGUaaGGCc -5'
20441 3' -58.9 NC_004688.1 + 74056 0.66 0.739311
Target:  5'- aGGGUG-UCCAUgcggguggugagCGCCGCCCcaUCgGGg -3'
miRNA:   3'- -CCCACuGGGUG------------GCGGUGGGuaAGgCC- -5'
20441 3' -58.9 NC_004688.1 + 85591 0.66 0.739311
Target:  5'- --aUGACCCGcucguCCGCCGCCUggagaaugAUUCCGc -3'
miRNA:   3'- cccACUGGGU-----GGCGGUGGG--------UAAGGCc -5'
20441 3' -58.9 NC_004688.1 + 75588 0.66 0.729661
Target:  5'- gGGGUG-UCgGCCGCCGCggaCuccUCCGGc -3'
miRNA:   3'- -CCCACuGGgUGGCGGUGg--Gua-AGGCC- -5'
20441 3' -58.9 NC_004688.1 + 69437 0.67 0.700256
Target:  5'- cGGUGACCCAgCCGUgaCAUCCAcgcacgCCGu -3'
miRNA:   3'- cCCACUGGGU-GGCG--GUGGGUaa----GGCc -5'
20441 3' -58.9 NC_004688.1 + 37333 0.67 0.689336
Target:  5'- aGGUG-CCUGCCGCCACggagauuucaaccUCGUcgCCGGu -3'
miRNA:   3'- cCCACuGGGUGGCGGUG-------------GGUAa-GGCC- -5'
20441 3' -58.9 NC_004688.1 + 278 0.67 0.68036
Target:  5'- cGGG-GGgCgGCC-CCGCCCcgguUUCCGGg -3'
miRNA:   3'- -CCCaCUgGgUGGcGGUGGGu---AAGGCC- -5'
20441 3' -58.9 NC_004688.1 + 10042 0.68 0.654275
Target:  5'- aGGGUGGCgacugcuucaaCCGCCGCCGCgCGcagugcgcgcaguucUUCCaGGu -3'
miRNA:   3'- -CCCACUG-----------GGUGGCGGUGgGU---------------AAGG-CC- -5'
20441 3' -58.9 NC_004688.1 + 86313 0.68 0.650248
Target:  5'- -cGUGGCCCGCgCGUCcCCCAgUgCGGa -3'
miRNA:   3'- ccCACUGGGUG-GCGGuGGGUaAgGCC- -5'
20441 3' -58.9 NC_004688.1 + 48760 0.68 0.650248
Target:  5'- cGGGgGGCCUcguCCGCCGCCaucgCCGa -3'
miRNA:   3'- -CCCaCUGGGu--GGCGGUGGguaaGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.