miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20442 3' -56.6 NC_004688.1 + 29231 0.66 0.813321
Target:  5'- cGCCUGGCcgGCGUUguugaaauugucguGGGCcgucuucaccUGCCCCGAc- -3'
miRNA:   3'- -CGGACUG--CGUAG--------------UCCG----------ACGGGGUUag -5'
20442 3' -56.6 NC_004688.1 + 15148 0.66 0.779026
Target:  5'- cGCCUGugGaaCAUUaccgGGGcCUGCCUCAAg- -3'
miRNA:   3'- -CGGACugC--GUAG----UCC-GACGGGGUUag -5'
20442 3' -56.6 NC_004688.1 + 25332 0.67 0.749798
Target:  5'- uCgUGGuucUGCGUUGGGCUGCCgCGGUCc -3'
miRNA:   3'- cGgACU---GCGUAGUCCGACGGgGUUAG- -5'
20442 3' -56.6 NC_004688.1 + 16589 0.67 0.739824
Target:  5'- gGCCaaauccGACGCGacacccaucuUCGGGCcGCCCCGGc- -3'
miRNA:   3'- -CGGa-----CUGCGU----------AGUCCGaCGGGGUUag -5'
20442 3' -56.6 NC_004688.1 + 42700 0.67 0.736812
Target:  5'- cGCCUucgauguagucaagGACGCAUUGGGCccauuugucGCCCUuGUCg -3'
miRNA:   3'- -CGGA--------------CUGCGUAGUCCGa--------CGGGGuUAG- -5'
20442 3' -56.6 NC_004688.1 + 66180 0.68 0.678238
Target:  5'- gGCUUGACcgGCAccugcUgAGGCUgGCCCCuGUCg -3'
miRNA:   3'- -CGGACUG--CGU-----AgUCCGA-CGGGGuUAG- -5'
20442 3' -56.6 NC_004688.1 + 10061 0.68 0.656234
Target:  5'- cGCCUGACGCucggccuUCAGGguggcgaCUGCUUCAAc- -3'
miRNA:   3'- -CGGACUGCGu------AGUCC-------GACGGGGUUag -5'
20442 3' -56.6 NC_004688.1 + 46495 0.69 0.636246
Target:  5'- aGCCgauCGCcgCGGGCU-CCCCGGUg -3'
miRNA:   3'- -CGGacuGCGuaGUCCGAcGGGGUUAg -5'
20442 3' -56.6 NC_004688.1 + 5553 0.7 0.573312
Target:  5'- aCCUGGCGCAUCAG-C-GCCUCGuUCu -3'
miRNA:   3'- cGGACUGCGUAGUCcGaCGGGGUuAG- -5'
20442 3' -56.6 NC_004688.1 + 78890 0.71 0.511936
Target:  5'- uGUCUGACGgAgccaCGGGgaGCCCCAGg- -3'
miRNA:   3'- -CGGACUGCgUa---GUCCgaCGGGGUUag -5'
20442 3' -56.6 NC_004688.1 + 25960 1.1 0.001247
Target:  5'- gGCCUGACGCAUCAGGCUGCCCCAAUCc -3'
miRNA:   3'- -CGGACUGCGUAGUCCGACGGGGUUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.