miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20442 5' -61.1 NC_004688.1 + 3092 0.66 0.622645
Target:  5'- uGCGgaAGCGGcgaucacgcGCCACCC-CCGGCGg--- -3'
miRNA:   3'- -CGC--UCGCC---------CGGUGGGuGGCUGCagaa -5'
20442 5' -61.1 NC_004688.1 + 34431 0.66 0.622645
Target:  5'- aCGGGCGaaccguGCCGCCCACgGugGUg-- -3'
miRNA:   3'- cGCUCGCc-----CGGUGGGUGgCugCAgaa -5'
20442 5' -61.1 NC_004688.1 + 17755 0.66 0.602455
Target:  5'- ---cGgGGGCCGCCCGCggCGGCG-CUUa -3'
miRNA:   3'- cgcuCgCCCGGUGGGUG--GCUGCaGAA- -5'
20442 5' -61.1 NC_004688.1 + 53655 0.66 0.602455
Target:  5'- gGCcuGCGGGuCCGCCCAggcuccggcaUUGACGUCg- -3'
miRNA:   3'- -CGcuCGCCC-GGUGGGU----------GGCUGCAGaa -5'
20442 5' -61.1 NC_004688.1 + 84838 0.66 0.602455
Target:  5'- aGCGuuuGCGGGCCgaaggagacgcgACCCAucuCCGGgGUCc- -3'
miRNA:   3'- -CGCu--CGCCCGG------------UGGGU---GGCUgCAGaa -5'
20442 5' -61.1 NC_004688.1 + 915 0.66 0.592388
Target:  5'- ---cGCGGGCCGCCCAagCGAgGUg-- -3'
miRNA:   3'- cgcuCGCCCGGUGGGUg-GCUgCAgaa -5'
20442 5' -61.1 NC_004688.1 + 95387 0.66 0.592388
Target:  5'- cGCGAG-GuGUCACCUACCGGCaUCUUc -3'
miRNA:   3'- -CGCUCgCcCGGUGGGUGGCUGcAGAA- -5'
20442 5' -61.1 NC_004688.1 + 80369 0.66 0.579345
Target:  5'- -aGGGCGGGUCugUgagaauugcaucgaCACUGGCGUCa- -3'
miRNA:   3'- cgCUCGCCCGGugG--------------GUGGCUGCAGaa -5'
20442 5' -61.1 NC_004688.1 + 59974 0.67 0.532806
Target:  5'- cCGAG-GGuGCCACCgCGCCGGCGa--- -3'
miRNA:   3'- cGCUCgCC-CGGUGG-GUGGCUGCagaa -5'
20442 5' -61.1 NC_004688.1 + 98796 0.67 0.532806
Target:  5'- gGgGGGCGGGCCagcggGCUgGCUGACGcgCUg -3'
miRNA:   3'- -CgCUCGCCCGG-----UGGgUGGCUGCa-GAa -5'
20442 5' -61.1 NC_004688.1 + 63720 0.67 0.513398
Target:  5'- -gGAGCGGGCC-UCCGCCagguauucgagGGCGUUg- -3'
miRNA:   3'- cgCUCGCCCGGuGGGUGG-----------CUGCAGaa -5'
20442 5' -61.1 NC_004688.1 + 68681 0.68 0.488616
Target:  5'- aGCG-GCGacuggaucugcaaguGGCCGCCCGCUGcugccucuGCGUCUa -3'
miRNA:   3'- -CGCuCGC---------------CCGGUGGGUGGC--------UGCAGAa -5'
20442 5' -61.1 NC_004688.1 + 58473 0.69 0.410224
Target:  5'- gGCcAGauGGCCGCCCucguguguaugaugACCGACGUCa- -3'
miRNA:   3'- -CGcUCgcCCGGUGGG--------------UGGCUGCAGaa -5'
20442 5' -61.1 NC_004688.1 + 58119 0.71 0.332658
Target:  5'- uGCGGGCGcGGCC-CCCGCC-ACG-CUa -3'
miRNA:   3'- -CGCUCGC-CCGGuGGGUGGcUGCaGAa -5'
20442 5' -61.1 NC_004688.1 + 33308 0.72 0.303959
Target:  5'- aCGAcgGCGGGCUAUCCGgCGACGUgUUg -3'
miRNA:   3'- cGCU--CGCCCGGUGGGUgGCUGCAgAA- -5'
20442 5' -61.1 NC_004688.1 + 46624 0.72 0.293024
Target:  5'- aGUGGGCGGGCCGCCCcgucaagaaugacccGCCcACGcCUc -3'
miRNA:   3'- -CGCUCGCCCGGUGGG---------------UGGcUGCaGAa -5'
20442 5' -61.1 NC_004688.1 + 48987 0.74 0.196782
Target:  5'- uGCGAGUcGGCCGCCCAgcucguggagaugcUCGGCGUCg- -3'
miRNA:   3'- -CGCUCGcCCGGUGGGU--------------GGCUGCAGaa -5'
20442 5' -61.1 NC_004688.1 + 90619 0.76 0.166629
Target:  5'- cGCGGGCGGccaGCCGCUCACCGAgG-CUUg -3'
miRNA:   3'- -CGCUCGCC---CGGUGGGUGGCUgCaGAA- -5'
20442 5' -61.1 NC_004688.1 + 25924 1.07 0.000881
Target:  5'- cGCGAGCGGGCCACCCACCGACGUCUUa -3'
miRNA:   3'- -CGCUCGCCCGGUGGGUGGCUGCAGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.