miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20443 3' -52.4 NC_004688.1 + 35502 0.66 0.970804
Target:  5'- cCGGCGccgccauaUGUgGCCGAcgGGGCUGAGc-- -3'
miRNA:   3'- aGCUGU--------AUAgCGGCU--CCCGACUUagc -5'
20443 3' -52.4 NC_004688.1 + 77946 0.66 0.970804
Target:  5'- uUCGAUggGUgGCCGGGcGGCgGGAUgGu -3'
miRNA:   3'- -AGCUGuaUAgCGGCUC-CCGaCUUAgC- -5'
20443 3' -52.4 NC_004688.1 + 9806 0.66 0.964388
Target:  5'- cCGG-AUGUCGCUcuuaucgaggGAGGGCcGggUCGu -3'
miRNA:   3'- aGCUgUAUAGCGG----------CUCCCGaCuuAGC- -5'
20443 3' -52.4 NC_004688.1 + 49118 0.66 0.964388
Target:  5'- uUUGGCGgaucugggCGCCGAGGGCUa----- -3'
miRNA:   3'- -AGCUGUaua-----GCGGCUCCCGAcuuagc -5'
20443 3' -52.4 NC_004688.1 + 80242 0.66 0.953009
Target:  5'- cUCGGCGUAUCGCCGGucGGCg------ -3'
miRNA:   3'- -AGCUGUAUAGCGGCUc-CCGacuuagc -5'
20443 3' -52.4 NC_004688.1 + 103918 0.67 0.948727
Target:  5'- uUCGcCAUggcAUCGCuCGA-GGUUGAGUCGu -3'
miRNA:   3'- -AGCuGUA---UAGCG-GCUcCCGACUUAGC- -5'
20443 3' -52.4 NC_004688.1 + 61827 0.67 0.939408
Target:  5'- gCGGCGguaGUUGCCGcGGGGCUc-GUCGg -3'
miRNA:   3'- aGCUGUa--UAGCGGC-UCCCGAcuUAGC- -5'
20443 3' -52.4 NC_004688.1 + 37032 0.68 0.923503
Target:  5'- gUCGuCGcGUCGCUGAuGGCaGGAUCGg -3'
miRNA:   3'- -AGCuGUaUAGCGGCUcCCGaCUUAGC- -5'
20443 3' -52.4 NC_004688.1 + 24415 0.68 0.917685
Target:  5'- uUCGGCAUGaaGUCGuucGGGUUGAgcGUCGa -3'
miRNA:   3'- -AGCUGUAUagCGGCu--CCCGACU--UAGC- -5'
20443 3' -52.4 NC_004688.1 + 25428 0.68 0.91161
Target:  5'- cCGAacg--CGCCGGGGccGCUGAAUCc -3'
miRNA:   3'- aGCUguauaGCGGCUCC--CGACUUAGc -5'
20443 3' -52.4 NC_004688.1 + 51206 0.69 0.891857
Target:  5'- uUCGACAUGgugcgCGCCGAGuaCUGcAUCu -3'
miRNA:   3'- -AGCUGUAUa----GCGGCUCccGACuUAGc -5'
20443 3' -52.4 NC_004688.1 + 42884 0.69 0.865244
Target:  5'- cUCGACAccUCguagaggcccucguaGCCGGGGGCUGGG-CGc -3'
miRNA:   3'- -AGCUGUauAG---------------CGGCUCCCGACUUaGC- -5'
20443 3' -52.4 NC_004688.1 + 7649 0.7 0.810904
Target:  5'- aUCGGCAUgAUCGCCGucGGCcGGuUCGc -3'
miRNA:   3'- -AGCUGUA-UAGCGGCucCCGaCUuAGC- -5'
20443 3' -52.4 NC_004688.1 + 26522 1.09 0.004813
Target:  5'- uUCGACAUAUCGCCGAGGGCUGAAUCGc -3'
miRNA:   3'- -AGCUGUAUAGCGGCUCCCGACUUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.