miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20443 5' -53.1 NC_004688.1 + 96225 0.66 0.944195
Target:  5'- aUUCCG-CAAACCuCUUGGCGCau-UGGc -3'
miRNA:   3'- -AAGGUaGUUUGG-GAGCUGCGgcuACC- -5'
20443 5' -53.1 NC_004688.1 + 24219 0.66 0.939408
Target:  5'- gUCCGUCGcGCCCguggggacCGuuGCCGGUGc -3'
miRNA:   3'- aAGGUAGUuUGGGa-------GCugCGGCUACc -5'
20443 5' -53.1 NC_004688.1 + 23331 0.66 0.934364
Target:  5'- gUUCAUCGcGCCggCGAUGCCcGUGGu -3'
miRNA:   3'- aAGGUAGUuUGGgaGCUGCGGcUACC- -5'
20443 5' -53.1 NC_004688.1 + 8814 0.67 0.929063
Target:  5'- -aCCuUCAGGCCCUUGuCGUCGAc-- -3'
miRNA:   3'- aaGGuAGUUUGGGAGCuGCGGCUacc -5'
20443 5' -53.1 NC_004688.1 + 33885 0.67 0.929063
Target:  5'- -gCCAaCGAGCCCUUGcCGCCGuuaccGGc -3'
miRNA:   3'- aaGGUaGUUUGGGAGCuGCGGCua---CC- -5'
20443 5' -53.1 NC_004688.1 + 53817 0.67 0.917685
Target:  5'- gUCUugaAGGCUCUCGugGUCGAUGu -3'
miRNA:   3'- aAGGuagUUUGGGAGCugCGGCUACc -5'
20443 5' -53.1 NC_004688.1 + 38567 0.67 0.917685
Target:  5'- gUCgAUCAGAUCCUCGuaGCCGG-GGu -3'
miRNA:   3'- aAGgUAGUUUGGGAGCugCGGCUaCC- -5'
20443 5' -53.1 NC_004688.1 + 2494 0.67 0.91161
Target:  5'- gUCUAg-AAGCCCuUCGACGCgGAcGGg -3'
miRNA:   3'- aAGGUagUUUGGG-AGCUGCGgCUaCC- -5'
20443 5' -53.1 NC_004688.1 + 18222 0.67 0.905278
Target:  5'- cUUCCAggccggugaUgGGGCCCgUGGCGCCGGUGc -3'
miRNA:   3'- -AAGGU---------AgUUUGGGaGCUGCGGCUACc -5'
20443 5' -53.1 NC_004688.1 + 15708 0.68 0.891858
Target:  5'- cUCUAUCgGAACCCUauuggguaACGCCGggGGg -3'
miRNA:   3'- aAGGUAG-UUUGGGAgc------UGCGGCuaCC- -5'
20443 5' -53.1 NC_004688.1 + 10684 0.68 0.877452
Target:  5'- gUCCGUCAggucGACCUcaUgGGCGCUGggGGc -3'
miRNA:   3'- aAGGUAGU----UUGGG--AgCUGCGGCuaCC- -5'
20443 5' -53.1 NC_004688.1 + 23094 0.69 0.83741
Target:  5'- gUCCGagAAACCCgaGACGCCGAg-- -3'
miRNA:   3'- aAGGUagUUUGGGagCUGCGGCUacc -5'
20443 5' -53.1 NC_004688.1 + 12345 0.69 0.819927
Target:  5'- cUCUGcgGAGCCCguggCGACGCCGAgguUGGc -3'
miRNA:   3'- aAGGUagUUUGGGa---GCUGCGGCU---ACC- -5'
20443 5' -53.1 NC_004688.1 + 75247 0.69 0.819927
Target:  5'- -gUCGUUguagAGGCCCUCGGCGagcaCGGUGGc -3'
miRNA:   3'- aaGGUAG----UUUGGGAGCUGCg---GCUACC- -5'
20443 5' -53.1 NC_004688.1 + 7695 0.7 0.810904
Target:  5'- -gCCGUCcucAUCCUUGGCGUCGGUGa -3'
miRNA:   3'- aaGGUAGuu-UGGGAGCUGCGGCUACc -5'
20443 5' -53.1 NC_004688.1 + 51778 0.7 0.801707
Target:  5'- aUUCgGUUGAGCCCUgCGACGuuGgcGGu -3'
miRNA:   3'- -AAGgUAGUUUGGGA-GCUGCggCuaCC- -5'
20443 5' -53.1 NC_004688.1 + 40897 0.7 0.763354
Target:  5'- -gCCA-CGGACCCg-GACGCgGAUGGc -3'
miRNA:   3'- aaGGUaGUUUGGGagCUGCGgCUACC- -5'
20443 5' -53.1 NC_004688.1 + 74698 0.72 0.702256
Target:  5'- -aCCAggCGGguGCCgUCGGCGCCGAUGc -3'
miRNA:   3'- aaGGUa-GUU--UGGgAGCUGCGGCUACc -5'
20443 5' -53.1 NC_004688.1 + 43422 0.74 0.575208
Target:  5'- aUCCGUC--ACCCUgGACGCCGucgaucUGGu -3'
miRNA:   3'- aAGGUAGuuUGGGAgCUGCGGCu-----ACC- -5'
20443 5' -53.1 NC_004688.1 + 104187 0.77 0.407579
Target:  5'- -aCCAUUGGucuGCCCaugUCGACGCUGAUGGg -3'
miRNA:   3'- aaGGUAGUU---UGGG---AGCUGCGGCUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.