miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20444 5' -55.2 NC_004688.1 + 28520 0.66 0.88906
Target:  5'- ---cUGACCCGGGUGGGuCUUGaugagcgccaCCUGGc -3'
miRNA:   3'- ccucAUUGGGUCCACUC-GAAC----------GGGCC- -5'
20444 5' -55.2 NC_004688.1 + 52091 0.66 0.874761
Target:  5'- -uGGUGguGCCCGGGc-AGCUUGUUCGGc -3'
miRNA:   3'- ccUCAU--UGGGUCCacUCGAACGGGCC- -5'
20444 5' -55.2 NC_004688.1 + 69706 0.67 0.867271
Target:  5'- gGGAGUucACCaGGGUGgcagcGGCcUGCuCCGGg -3'
miRNA:   3'- -CCUCAu-UGGgUCCAC-----UCGaACG-GGCC- -5'
20444 5' -55.2 NC_004688.1 + 42937 0.67 0.843507
Target:  5'- cGGGGUGGCgCCGGGUGGGgaccguucUGUCCa- -3'
miRNA:   3'- -CCUCAUUG-GGUCCACUCga------ACGGGcc -5'
20444 5' -55.2 NC_004688.1 + 40158 0.68 0.817951
Target:  5'- aGAGUAGCCC-GGUGAGUaucagGCCg-- -3'
miRNA:   3'- cCUCAUUGGGuCCACUCGaa---CGGgcc -5'
20444 5' -55.2 NC_004688.1 + 44239 0.69 0.742752
Target:  5'- cGGGGccggcgAugCCGccGGUGAcguggccguucaGCUUGCCCGGc -3'
miRNA:   3'- -CCUCa-----UugGGU--CCACU------------CGAACGGGCC- -5'
20444 5' -55.2 NC_004688.1 + 90717 0.7 0.711613
Target:  5'- cGGAGUAACCUuGGUGucgacggGGCcgGUCUGGa -3'
miRNA:   3'- -CCUCAUUGGGuCCAC-------UCGaaCGGGCC- -5'
20444 5' -55.2 NC_004688.1 + 524 0.73 0.52691
Target:  5'- gGGcuUGcCCCAGGUGAGCUcGCCacaGGa -3'
miRNA:   3'- -CCucAUuGGGUCCACUCGAaCGGg--CC- -5'
20444 5' -55.2 NC_004688.1 + 54088 0.73 0.506977
Target:  5'- -cAGUAGCCCAGGagGAGCgucagGCCCu- -3'
miRNA:   3'- ccUCAUUGGGUCCa-CUCGaa---CGGGcc -5'
20444 5' -55.2 NC_004688.1 + 54431 0.79 0.242254
Target:  5'- cGGGGUGAUCCGGGggaaggcugGAGUggugGCCCGGc -3'
miRNA:   3'- -CCUCAUUGGGUCCa--------CUCGaa--CGGGCC- -5'
20444 5' -55.2 NC_004688.1 + 27237 1.13 0.001419
Target:  5'- gGGAGUAACCCAGGUGAGCUUGCCCGGa -3'
miRNA:   3'- -CCUCAUUGGGUCCACUCGAACGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.