miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20449 3' -51.5 NC_004688.1 + 17042 0.66 0.973659
Target:  5'- ---cGCCGCCGuuugg-GCCCGaCCAg -3'
miRNA:   3'- uaaaUGGCGGCuguuaaUGGGC-GGUg -5'
20449 3' -51.5 NC_004688.1 + 23200 0.66 0.973659
Target:  5'- ---gGCCGuuGACAAggUACUggaucuccagCGCCGCc -3'
miRNA:   3'- uaaaUGGCggCUGUUa-AUGG----------GCGGUG- -5'
20449 3' -51.5 NC_004688.1 + 29702 0.66 0.967526
Target:  5'- -gUUGCCcgGCUGGgGAUcACCCgGCCGCc -3'
miRNA:   3'- uaAAUGG--CGGCUgUUAaUGGG-CGGUG- -5'
20449 3' -51.5 NC_004688.1 + 104209 0.66 0.967526
Target:  5'- ----uUCGUCGACAAggccaUGCCCGaCCAUu -3'
miRNA:   3'- uaaauGGCGGCUGUUa----AUGGGC-GGUG- -5'
20449 3' -51.5 NC_004688.1 + 30726 0.66 0.967526
Target:  5'- ---aGCCGuuGACAAcggugACCCGaCCGu -3'
miRNA:   3'- uaaaUGGCggCUGUUaa---UGGGC-GGUg -5'
20449 3' -51.5 NC_004688.1 + 88730 0.66 0.964107
Target:  5'- ---gGCCGCCG-Cuc-UACCCGCagggaGCa -3'
miRNA:   3'- uaaaUGGCGGCuGuuaAUGGGCGg----UG- -5'
20449 3' -51.5 NC_004688.1 + 26116 0.66 0.964107
Target:  5'- ---cACCGCCcGCGGcgcccaACCCGCCGa -3'
miRNA:   3'- uaaaUGGCGGcUGUUaa----UGGGCGGUg -5'
20449 3' -51.5 NC_004688.1 + 32128 0.66 0.960445
Target:  5'- --gUGCCaUCGGCAAUgACCuuCGCCGCa -3'
miRNA:   3'- uaaAUGGcGGCUGUUAaUGG--GCGGUG- -5'
20449 3' -51.5 NC_004688.1 + 25446 0.66 0.956532
Target:  5'- -gUUGCCcCCGACG---AUCCGCCGa -3'
miRNA:   3'- uaAAUGGcGGCUGUuaaUGGGCGGUg -5'
20449 3' -51.5 NC_004688.1 + 34630 0.66 0.956532
Target:  5'- ----cCCGCCGuauacuccGCGA-UACCCGaCCGCa -3'
miRNA:   3'- uaaauGGCGGC--------UGUUaAUGGGC-GGUG- -5'
20449 3' -51.5 NC_004688.1 + 7638 0.66 0.956532
Target:  5'- ---cGCCGUCGGcCGGUUcGCCuCGUCGCg -3'
miRNA:   3'- uaaaUGGCGGCU-GUUAA-UGG-GCGGUG- -5'
20449 3' -51.5 NC_004688.1 + 21195 0.67 0.943242
Target:  5'- ---aGCgGCgGACAcagcccgaGCCCGCCGCu -3'
miRNA:   3'- uaaaUGgCGgCUGUuaa-----UGGGCGGUG- -5'
20449 3' -51.5 NC_004688.1 + 37957 0.67 0.943242
Target:  5'- -gUUAuCCGCCGcgccaGCAAUaGCCgCGCCAg -3'
miRNA:   3'- uaAAU-GGCGGC-----UGUUAaUGG-GCGGUg -5'
20449 3' -51.5 NC_004688.1 + 23324 0.67 0.942758
Target:  5'- -----gCGCCGGCGA-UGCCCguggucaGCCGCa -3'
miRNA:   3'- uaaaugGCGGCUGUUaAUGGG-------CGGUG- -5'
20449 3' -51.5 NC_004688.1 + 109827 0.67 0.938282
Target:  5'- ---cACUGuuGACGcUUGCCgCGCCAg -3'
miRNA:   3'- uaaaUGGCggCUGUuAAUGG-GCGGUg -5'
20449 3' -51.5 NC_004688.1 + 46616 0.67 0.938282
Target:  5'- ---gGCCGCCccguCAAgaaugACCCGcCCACg -3'
miRNA:   3'- uaaaUGGCGGcu--GUUaa---UGGGC-GGUG- -5'
20449 3' -51.5 NC_004688.1 + 25520 0.67 0.938282
Target:  5'- ---gACCGCCGGguGacccaCCGCCACc -3'
miRNA:   3'- uaaaUGGCGGCUguUaaug-GGCGGUG- -5'
20449 3' -51.5 NC_004688.1 + 28310 0.67 0.938282
Target:  5'- ---gACCGCCGGCGGaaccagcUGCCgggugaagccguCGCCGCa -3'
miRNA:   3'- uaaaUGGCGGCUGUUa------AUGG------------GCGGUG- -5'
20449 3' -51.5 NC_004688.1 + 25068 0.67 0.938282
Target:  5'- ----uCCGCCGGgGAcUGCCCuggaGCCGCc -3'
miRNA:   3'- uaaauGGCGGCUgUUaAUGGG----CGGUG- -5'
20449 3' -51.5 NC_004688.1 + 33889 0.67 0.938282
Target:  5'- ---gGCCGCCaACGAgcccUugCCGCCGu -3'
miRNA:   3'- uaaaUGGCGGcUGUUa---AugGGCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.