miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2045 3' -59.3 NC_001347.2 + 1265 0.66 0.868704
Target:  5'- cGAcgcGGGcacgcuGCUGCC-GCUCGGaCGGCCg -3'
miRNA:   3'- uCU---UCCu-----CGAUGGcCGAGUCcGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 75403 0.66 0.854142
Target:  5'- aAGcGGGAGCgg-CGGC-CGuGGCGGCg -3'
miRNA:   3'- -UCuUCCUCGaugGCCGaGU-CCGCCGg -5'
2045 3' -59.3 NC_001347.2 + 110184 0.66 0.851893
Target:  5'- --cAGGuGCU-UCGGCUCaucaccaacguggaAGGCGGCUc -3'
miRNA:   3'- ucuUCCuCGAuGGCCGAG--------------UCCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 152019 0.66 0.841962
Target:  5'- gAGGAGGAGa-GCCGGCaaagaagaGGGCgcggaaaccaccgucGGCCg -3'
miRNA:   3'- -UCUUCCUCgaUGGCCGag------UCCG---------------CCGG- -5'
2045 3' -59.3 NC_001347.2 + 135874 0.66 0.841185
Target:  5'- gGGGAGGAGCgggGugggggugggaagccCCcGCUCGGGUccccccgGGCCa -3'
miRNA:   3'- -UCUUCCUCGa--U---------------GGcCGAGUCCG-------CCGG- -5'
2045 3' -59.3 NC_001347.2 + 113096 0.66 0.838846
Target:  5'- aAGAAcGGAcgGCgacGCUGGaagcgCAGGCGGCUg -3'
miRNA:   3'- -UCUU-CCU--CGa--UGGCCga---GUCCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 155114 0.66 0.830937
Target:  5'- -uGAGGAuuUACCuGGUaUgAGGCGGCCg -3'
miRNA:   3'- ucUUCCUcgAUGG-CCG-AgUCCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 79176 0.66 0.830937
Target:  5'- cAGAcgAGGAGCgGCgCGGCcCAGaGCgugucGGCCg -3'
miRNA:   3'- -UCU--UCCUCGaUG-GCCGaGUC-CG-----CCGG- -5'
2045 3' -59.3 NC_001347.2 + 31654 0.67 0.822863
Target:  5'- gAGAAaGGGaUAgUGGCUCGGGuCGGCUg -3'
miRNA:   3'- -UCUUcCUCgAUgGCCGAGUCC-GCCGG- -5'
2045 3' -59.3 NC_001347.2 + 128796 0.67 0.822863
Target:  5'- ---uGGAGCUGCa--CUCAcGCGGCCg -3'
miRNA:   3'- ucuuCCUCGAUGgccGAGUcCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 207140 0.67 0.821229
Target:  5'- cGGAGGGGUguuuggcgagcCCGGaucCGGGCGGUCu -3'
miRNA:   3'- uCUUCCUCGau---------GGCCga-GUCCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 77854 0.67 0.806246
Target:  5'- ---uGGcGCUGCU-GCUgCAGGUGGCCg -3'
miRNA:   3'- ucuuCCuCGAUGGcCGA-GUCCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 37063 0.67 0.797718
Target:  5'- cGGAGGuGCUGgCGGC-CGuGGCcuguGGCCc -3'
miRNA:   3'- uCUUCCuCGAUgGCCGaGU-CCG----CCGG- -5'
2045 3' -59.3 NC_001347.2 + 142526 0.67 0.786428
Target:  5'- cGGGAGGuGGCUgcuuucucgugaacGCCGGCgaagacgaggCuGGCGGCg -3'
miRNA:   3'- -UCUUCC-UCGA--------------UGGCCGa---------GuCCGCCGg -5'
2045 3' -59.3 NC_001347.2 + 200090 0.67 0.780259
Target:  5'- gGGcGGGAcGUUauauagugaggGCCGGCUCcGGCGGgCa -3'
miRNA:   3'- -UCuUCCU-CGA-----------UGGCCGAGuCCGCCgG- -5'
2045 3' -59.3 NC_001347.2 + 20857 0.67 0.780259
Target:  5'- ---cGGGGCUGgCGuuUCuAGGUGGCCg -3'
miRNA:   3'- ucuuCCUCGAUgGCcgAG-UCCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 42904 0.67 0.779373
Target:  5'- cGGAgAGGAGCUguccgccGCCGGga-AGGUGGUCu -3'
miRNA:   3'- -UCU-UCCUCGA-------UGGCCgagUCCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 31106 0.68 0.774924
Target:  5'- ---cGGAGCgugcuccauugccgGCCGGCgucCAGGCuGCCc -3'
miRNA:   3'- ucuuCCUCGa-------------UGGCCGa--GUCCGcCGG- -5'
2045 3' -59.3 NC_001347.2 + 135086 0.68 0.762314
Target:  5'- uGGAGGGGCgUACUgacgacaauugaGGUgUCAuGGCGGCCc -3'
miRNA:   3'- uCUUCCUCG-AUGG------------CCG-AGU-CCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 188169 0.68 0.762314
Target:  5'- cGAAGcccacGCUGCCcGUUC-GGCGGCCg -3'
miRNA:   3'- uCUUCcu---CGAUGGcCGAGuCCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.