Results 1 - 20 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 156763 | 0.85 | 0.089549 |
Target: 5'- gAGGAGGAGUUGCUGGCUCuggcgggagaagggaAGGCGGCa -3' miRNA: 3'- -UCUUCCUCGAUGGCCGAG---------------UCCGCCGg -5' |
|||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 126881 | 0.78 | 0.246974 |
Target: 5'- ---uGGGGCUgGCCGGCUacGGCGGCCg -3' miRNA: 3'- ucuuCCUCGA-UGGCCGAguCCGCCGG- -5' |
|||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 87760 | 0.77 | 0.28944 |
Target: 5'- cGAAGGAGCc-CUGGCcCAGGCGGUa -3' miRNA: 3'- uCUUCCUCGauGGCCGaGUCCGCCGg -5' |
|||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 172534 | 0.77 | 0.295954 |
Target: 5'- --cGGGGGCccGCUGGCUCGGcGCGGCUg -3' miRNA: 3'- ucuUCCUCGa-UGGCCGAGUC-CGCCGG- -5' |
|||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 113170 | 0.76 | 0.330232 |
Target: 5'- aAGAGGGAacgcgcgccccaGCcGCCGGCgu-GGCGGCCu -3' miRNA: 3'- -UCUUCCU------------CGaUGGCCGaguCCGCCGG- -5' |
|||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 36667 | 0.75 | 0.390954 |
Target: 5'- cGucGGAGCUcagACCgGGCUCcggcGGGUGGCCu -3' miRNA: 3'- uCuuCCUCGA---UGG-CCGAG----UCCGCCGG- -5' |
|||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 173656 | 0.74 | 0.39904 |
Target: 5'- uGGGAGGAGgUGgCGGCgguGGCGGCa -3' miRNA: 3'- -UCUUCCUCgAUgGCCGaguCCGCCGg -5' |
|||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 1718 | 0.73 | 0.485411 |
Target: 5'- cGGAcGGGAGCUgcGCCGGCggUGGGcCGGCa -3' miRNA: 3'- -UCU-UCCUCGA--UGGCCGa-GUCC-GCCGg -5' |
|||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 66903 | 0.73 | 0.485411 |
Target: 5'- gGGGAGGAGCaGCUGGUguuUCGauugcGGCGGCa -3' miRNA: 3'- -UCUUCCUCGaUGGCCG---AGU-----CCGCCGg -5' |
|||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 8781 | 0.73 | 0.467391 |
Target: 5'- cGAcGGcGgaGCCGGCUCAGaGCGGaCCa -3' miRNA: 3'- uCUuCCuCgaUGGCCGAGUC-CGCC-GG- -5' |
|||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 197543 | 0.72 | 0.522393 |
Target: 5'- gGGAccGcAGCgugGCCGGCgu-GGCGGCCg -3' miRNA: 3'- -UCUucC-UCGa--UGGCCGaguCCGCCGG- -5' |
|||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 142987 | 0.72 | 0.531811 |
Target: 5'- gAGgcGGAGgaGCCGGCggcGGCGGUg -3' miRNA: 3'- -UCuuCCUCgaUGGCCGaguCCGCCGg -5' |
|||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 18187 | 0.71 | 0.579715 |
Target: 5'- cGAcuGGGAGaccgACgGGCUCuacgAGGUGGCCa -3' miRNA: 3'- uCU--UCCUCga--UGgCCGAG----UCCGCCGG- -5' |
|||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 38746 | 0.71 | 0.579715 |
Target: 5'- uGucGGAGC-GCCGGCUgAGGCaGCa -3' miRNA: 3'- uCuuCCUCGaUGGCCGAgUCCGcCGg -5' |
|||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 125002 | 0.71 | 0.570044 |
Target: 5'- ---uGGGGCUGCUgcugcacgGGCUCGaccGGCGGCUg -3' miRNA: 3'- ucuuCCUCGAUGG--------CCGAGU---CCGCCGG- -5' |
|||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 201777 | 0.71 | 0.560412 |
Target: 5'- -aGAGGAGCUGCCGcacaccgccucGCUUAGaGCgcuGGCCg -3' miRNA: 3'- ucUUCCUCGAUGGC-----------CGAGUC-CG---CCGG- -5' |
|||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 77950 | 0.71 | 0.593312 |
Target: 5'- uGGAGGcgcAGCUGCgCGGCaagCAcauccgcuuguacguGGCGGCCg -3' miRNA: 3'- uCUUCC---UCGAUG-GCCGa--GU---------------CCGCCGG- -5' |
|||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 148597 | 0.7 | 0.608912 |
Target: 5'- uGAGcGGcGGCgugACCGGCggugcggucgCGGGUGGCCg -3' miRNA: 3'- uCUU-CC-UCGa--UGGCCGa---------GUCCGCCGG- -5' |
|||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 135209 | 0.7 | 0.657798 |
Target: 5'- -cGAGGcGCcgaccCCGGCU-GGGCGGCCg -3' miRNA: 3'- ucUUCCuCGau---GGCCGAgUCCGCCGG- -5' |
|||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 36378 | 0.7 | 0.618684 |
Target: 5'- cGGcAGGGGCaugcggccuUAgCGGCUCGGGCuGGCg -3' miRNA: 3'- -UCuUCCUCG---------AUgGCCGAGUCCG-CCGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home