Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 14298 | 0.69 | 0.715747 |
Target: 5'- cGccGGAGCUccccgcGCUGcCUguGGCGGCCg -3' miRNA: 3'- uCuuCCUCGA------UGGCcGAguCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 89526 | 0.69 | 0.68696 |
Target: 5'- --cAGGuGCgcgacgagGCCGGC-CAGGCGGgCa -3' miRNA: 3'- ucuUCCuCGa-------UGGCCGaGUCCGCCgG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 79625 | 0.68 | 0.728994 |
Target: 5'- cGAA--AGCUucgGCCGGCUgcugcaccacagcgcCAGGCGGCUg -3' miRNA: 3'- uCUUccUCGA---UGGCCGA---------------GUCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 63070 | 0.68 | 0.725223 |
Target: 5'- cGGAGGA-CUGCCGGCgggugUGGGCucGGCa -3' miRNA: 3'- uCUUCCUcGAUGGCCGa----GUCCG--CCGg -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 13512 | 0.68 | 0.734626 |
Target: 5'- --cGGGuGCUcACCcGC-CGGGCGGCCc -3' miRNA: 3'- ucuUCCuCGA-UGGcCGaGUCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 31106 | 0.68 | 0.774924 |
Target: 5'- ---cGGAGCgugcuccauugccgGCCGGCgucCAGGCuGCCc -3' miRNA: 3'- ucuuCCUCGa-------------UGGCCGa--GUCCGcCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 135086 | 0.68 | 0.762314 |
Target: 5'- uGGAGGGGCgUACUgacgacaauugaGGUgUCAuGGCGGCCc -3' miRNA: 3'- uCUUCCUCG-AUGG------------CCG-AGU-CCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 188169 | 0.68 | 0.762314 |
Target: 5'- cGAAGcccacGCUGCCcGUUC-GGCGGCCg -3' miRNA: 3'- uCUUCcu---CGAUGGcCGAGuCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 76162 | 0.68 | 0.75318 |
Target: 5'- -cGAGGGGUUGCgGauggaGCU-GGGCGGCCg -3' miRNA: 3'- ucUUCCUCGAUGgC-----CGAgUCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 6183 | 0.68 | 0.734626 |
Target: 5'- uAGAcGGAGUgUAUCGaGCUCGccGGCGGCg -3' miRNA: 3'- -UCUuCCUCG-AUGGC-CGAGU--CCGCCGg -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 128796 | 0.67 | 0.822863 |
Target: 5'- ---uGGAGCUGCa--CUCAcGCGGCCg -3' miRNA: 3'- ucuuCCUCGAUGgccGAGUcCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 207140 | 0.67 | 0.821229 |
Target: 5'- cGGAGGGGUguuuggcgagcCCGGaucCGGGCGGUCu -3' miRNA: 3'- uCUUCCUCGau---------GGCCga-GUCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 37063 | 0.67 | 0.797718 |
Target: 5'- cGGAGGuGCUGgCGGC-CGuGGCcuguGGCCc -3' miRNA: 3'- uCUUCCuCGAUgGCCGaGU-CCG----CCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 31654 | 0.67 | 0.822863 |
Target: 5'- gAGAAaGGGaUAgUGGCUCGGGuCGGCUg -3' miRNA: 3'- -UCUUcCUCgAUgGCCGAGUCC-GCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 77854 | 0.67 | 0.806246 |
Target: 5'- ---uGGcGCUGCU-GCUgCAGGUGGCCg -3' miRNA: 3'- ucuuCCuCGAUGGcCGA-GUCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 142526 | 0.67 | 0.786428 |
Target: 5'- cGGGAGGuGGCUgcuuucucgugaacGCCGGCgaagacgaggCuGGCGGCg -3' miRNA: 3'- -UCUUCC-UCGA--------------UGGCCGa---------GuCCGCCGg -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 20857 | 0.67 | 0.780259 |
Target: 5'- ---cGGGGCUGgCGuuUCuAGGUGGCCg -3' miRNA: 3'- ucuuCCUCGAUgGCcgAG-UCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 42904 | 0.67 | 0.779373 |
Target: 5'- cGGAgAGGAGCUguccgccGCCGGga-AGGUGGUCu -3' miRNA: 3'- -UCU-UCCUCGA-------UGGCCgagUCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 200090 | 0.67 | 0.780259 |
Target: 5'- gGGcGGGAcGUUauauagugaggGCCGGCUCcGGCGGgCa -3' miRNA: 3'- -UCuUCCU-CGA-----------UGGCCGAGuCCGCCgG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 113096 | 0.66 | 0.838846 |
Target: 5'- aAGAAcGGAcgGCgacGCUGGaagcgCAGGCGGCUg -3' miRNA: 3'- -UCUU-CCU--CGa--UGGCCga---GUCCGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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