Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 2045 | 3' | -59.3 | NC_001347.2 | + | 79176 | 0.66 | 0.830937 |
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Target: 5'- cAGAcgAGGAGCgGCgCGGCcCAGaGCgugucGGCCg -3' miRNA: 3'- -UCU--UCCUCGaUG-GCCGaGUC-CG-----CCGG- -5' |
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| 2045 | 3' | -59.3 | NC_001347.2 | + | 113096 | 0.66 | 0.838846 |
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Target: 5'- aAGAAcGGAcgGCgacGCUGGaagcgCAGGCGGCUg -3' miRNA: 3'- -UCUU-CCU--CGa--UGGCCga---GUCCGCCGG- -5' |
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| 2045 | 3' | -59.3 | NC_001347.2 | + | 135874 | 0.66 | 0.841185 |
|
Target: 5'- gGGGAGGAGCgggGugggggugggaagccCCcGCUCGGGUccccccgGGCCa -3' miRNA: 3'- -UCUUCCUCGa--U---------------GGcCGAGUCCG-------CCGG- -5' |
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| 2045 | 3' | -59.3 | NC_001347.2 | + | 75403 | 0.66 | 0.854142 |
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Target: 5'- aAGcGGGAGCgg-CGGC-CGuGGCGGCg -3' miRNA: 3'- -UCuUCCUCGaugGCCGaGU-CCGCCGg -5' |
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| 2045 | 3' | -59.3 | NC_001347.2 | + | 110184 | 0.66 | 0.851893 |
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Target: 5'- --cAGGuGCU-UCGGCUCaucaccaacguggaAGGCGGCUc -3' miRNA: 3'- ucuUCCuCGAuGGCCGAG--------------UCCGCCGG- -5' |
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| 2045 | 3' | -59.3 | NC_001347.2 | + | 152019 | 0.66 | 0.841962 |
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Target: 5'- gAGGAGGAGa-GCCGGCaaagaagaGGGCgcggaaaccaccgucGGCCg -3' miRNA: 3'- -UCUUCCUCgaUGGCCGag------UCCG---------------CCGG- -5' |
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| 2045 | 3' | -59.3 | NC_001347.2 | + | 155114 | 0.66 | 0.830937 |
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Target: 5'- -uGAGGAuuUACCuGGUaUgAGGCGGCCg -3' miRNA: 3'- ucUUCCUcgAUGG-CCG-AgUCCGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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