miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2045 3' -59.3 NC_001347.2 + 156763 0.85 0.089549
Target:  5'- gAGGAGGAGUUGCUGGCUCuggcgggagaagggaAGGCGGCa -3'
miRNA:   3'- -UCUUCCUCGAUGGCCGAG---------------UCCGCCGg -5'
2045 3' -59.3 NC_001347.2 + 126881 0.78 0.246974
Target:  5'- ---uGGGGCUgGCCGGCUacGGCGGCCg -3'
miRNA:   3'- ucuuCCUCGA-UGGCCGAguCCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 87760 0.77 0.28944
Target:  5'- cGAAGGAGCc-CUGGCcCAGGCGGUa -3'
miRNA:   3'- uCUUCCUCGauGGCCGaGUCCGCCGg -5'
2045 3' -59.3 NC_001347.2 + 172534 0.77 0.295954
Target:  5'- --cGGGGGCccGCUGGCUCGGcGCGGCUg -3'
miRNA:   3'- ucuUCCUCGa-UGGCCGAGUC-CGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 113170 0.76 0.330232
Target:  5'- aAGAGGGAacgcgcgccccaGCcGCCGGCgu-GGCGGCCu -3'
miRNA:   3'- -UCUUCCU------------CGaUGGCCGaguCCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 36667 0.75 0.390954
Target:  5'- cGucGGAGCUcagACCgGGCUCcggcGGGUGGCCu -3'
miRNA:   3'- uCuuCCUCGA---UGG-CCGAG----UCCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 173656 0.74 0.39904
Target:  5'- uGGGAGGAGgUGgCGGCgguGGCGGCa -3'
miRNA:   3'- -UCUUCCUCgAUgGCCGaguCCGCCGg -5'
2045 3' -59.3 NC_001347.2 + 8781 0.73 0.467391
Target:  5'- cGAcGGcGgaGCCGGCUCAGaGCGGaCCa -3'
miRNA:   3'- uCUuCCuCgaUGGCCGAGUC-CGCC-GG- -5'
2045 3' -59.3 NC_001347.2 + 1718 0.73 0.485411
Target:  5'- cGGAcGGGAGCUgcGCCGGCggUGGGcCGGCa -3'
miRNA:   3'- -UCU-UCCUCGA--UGGCCGa-GUCC-GCCGg -5'
2045 3' -59.3 NC_001347.2 + 66903 0.73 0.485411
Target:  5'- gGGGAGGAGCaGCUGGUguuUCGauugcGGCGGCa -3'
miRNA:   3'- -UCUUCCUCGaUGGCCG---AGU-----CCGCCGg -5'
2045 3' -59.3 NC_001347.2 + 197543 0.72 0.522393
Target:  5'- gGGAccGcAGCgugGCCGGCgu-GGCGGCCg -3'
miRNA:   3'- -UCUucC-UCGa--UGGCCGaguCCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 142987 0.72 0.531811
Target:  5'- gAGgcGGAGgaGCCGGCggcGGCGGUg -3'
miRNA:   3'- -UCuuCCUCgaUGGCCGaguCCGCCGg -5'
2045 3' -59.3 NC_001347.2 + 201777 0.71 0.560412
Target:  5'- -aGAGGAGCUGCCGcacaccgccucGCUUAGaGCgcuGGCCg -3'
miRNA:   3'- ucUUCCUCGAUGGC-----------CGAGUC-CG---CCGG- -5'
2045 3' -59.3 NC_001347.2 + 125002 0.71 0.570044
Target:  5'- ---uGGGGCUGCUgcugcacgGGCUCGaccGGCGGCUg -3'
miRNA:   3'- ucuuCCUCGAUGG--------CCGAGU---CCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 38746 0.71 0.579715
Target:  5'- uGucGGAGC-GCCGGCUgAGGCaGCa -3'
miRNA:   3'- uCuuCCUCGaUGGCCGAgUCCGcCGg -5'
2045 3' -59.3 NC_001347.2 + 18187 0.71 0.579715
Target:  5'- cGAcuGGGAGaccgACgGGCUCuacgAGGUGGCCa -3'
miRNA:   3'- uCU--UCCUCga--UGgCCGAG----UCCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 77950 0.71 0.593312
Target:  5'- uGGAGGcgcAGCUGCgCGGCaagCAcauccgcuuguacguGGCGGCCg -3'
miRNA:   3'- uCUUCC---UCGAUG-GCCGa--GU---------------CCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 148597 0.7 0.608912
Target:  5'- uGAGcGGcGGCgugACCGGCggugcggucgCGGGUGGCCg -3'
miRNA:   3'- uCUU-CC-UCGa--UGGCCGa---------GUCCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 36378 0.7 0.618684
Target:  5'- cGGcAGGGGCaugcggccuUAgCGGCUCGGGCuGGCg -3'
miRNA:   3'- -UCuUCCUCG---------AUgGCCGAGUCCG-CCGg -5'
2045 3' -59.3 NC_001347.2 + 135209 0.7 0.657798
Target:  5'- -cGAGGcGCcgaccCCGGCU-GGGCGGCCg -3'
miRNA:   3'- ucUUCCuCGau---GGCCGAgUCCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.