Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 76162 | 0.68 | 0.75318 |
Target: 5'- -cGAGGGGUUGCgGauggaGCU-GGGCGGCCg -3' miRNA: 3'- ucUUCCUCGAUGgC-----CGAgUCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 6183 | 0.68 | 0.734626 |
Target: 5'- uAGAcGGAGUgUAUCGaGCUCGccGGCGGCg -3' miRNA: 3'- -UCUuCCUCG-AUGGC-CGAGU--CCGCCGg -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 13512 | 0.68 | 0.734626 |
Target: 5'- --cGGGuGCUcACCcGC-CGGGCGGCCc -3' miRNA: 3'- ucuUCCuCGA-UGGcCGaGUCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 79625 | 0.68 | 0.728994 |
Target: 5'- cGAA--AGCUucgGCCGGCUgcugcaccacagcgcCAGGCGGCUg -3' miRNA: 3'- uCUUccUCGA---UGGCCGA---------------GUCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 63070 | 0.68 | 0.725223 |
Target: 5'- cGGAGGA-CUGCCGGCgggugUGGGCucGGCa -3' miRNA: 3'- uCUUCCUcGAUGGCCGa----GUCCG--CCGg -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 14298 | 0.69 | 0.715747 |
Target: 5'- cGccGGAGCUccccgcGCUGcCUguGGCGGCCg -3' miRNA: 3'- uCuuCCUCGA------UGGCcGAguCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 89526 | 0.69 | 0.68696 |
Target: 5'- --cAGGuGCgcgacgagGCCGGC-CAGGCGGgCa -3' miRNA: 3'- ucuUCCuCGa-------UGGCCGaGUCCGCCgG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 135209 | 0.7 | 0.657798 |
Target: 5'- -cGAGGcGCcgaccCCGGCU-GGGCGGCCg -3' miRNA: 3'- ucUUCCuCGau---GGCCGAgUCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 36378 | 0.7 | 0.618684 |
Target: 5'- cGGcAGGGGCaugcggccuUAgCGGCUCGGGCuGGCg -3' miRNA: 3'- -UCuUCCUCG---------AUgGCCGAGUCCG-CCGg -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 148597 | 0.7 | 0.608912 |
Target: 5'- uGAGcGGcGGCgugACCGGCggugcggucgCGGGUGGCCg -3' miRNA: 3'- uCUU-CC-UCGa--UGGCCGa---------GUCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 77950 | 0.71 | 0.593312 |
Target: 5'- uGGAGGcgcAGCUGCgCGGCaagCAcauccgcuuguacguGGCGGCCg -3' miRNA: 3'- uCUUCC---UCGAUG-GCCGa--GU---------------CCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 18187 | 0.71 | 0.579715 |
Target: 5'- cGAcuGGGAGaccgACgGGCUCuacgAGGUGGCCa -3' miRNA: 3'- uCU--UCCUCga--UGgCCGAG----UCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 38746 | 0.71 | 0.579715 |
Target: 5'- uGucGGAGC-GCCGGCUgAGGCaGCa -3' miRNA: 3'- uCuuCCUCGaUGGCCGAgUCCGcCGg -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 125002 | 0.71 | 0.570044 |
Target: 5'- ---uGGGGCUGCUgcugcacgGGCUCGaccGGCGGCUg -3' miRNA: 3'- ucuuCCUCGAUGG--------CCGAGU---CCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 201777 | 0.71 | 0.560412 |
Target: 5'- -aGAGGAGCUGCCGcacaccgccucGCUUAGaGCgcuGGCCg -3' miRNA: 3'- ucUUCCUCGAUGGC-----------CGAGUC-CG---CCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 142987 | 0.72 | 0.531811 |
Target: 5'- gAGgcGGAGgaGCCGGCggcGGCGGUg -3' miRNA: 3'- -UCuuCCUCgaUGGCCGaguCCGCCGg -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 197543 | 0.72 | 0.522393 |
Target: 5'- gGGAccGcAGCgugGCCGGCgu-GGCGGCCg -3' miRNA: 3'- -UCUucC-UCGa--UGGCCGaguCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 1718 | 0.73 | 0.485411 |
Target: 5'- cGGAcGGGAGCUgcGCCGGCggUGGGcCGGCa -3' miRNA: 3'- -UCU-UCCUCGA--UGGCCGa-GUCC-GCCGg -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 66903 | 0.73 | 0.485411 |
Target: 5'- gGGGAGGAGCaGCUGGUguuUCGauugcGGCGGCa -3' miRNA: 3'- -UCUUCCUCGaUGGCCG---AGU-----CCGCCGg -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 8781 | 0.73 | 0.467391 |
Target: 5'- cGAcGGcGgaGCCGGCUCAGaGCGGaCCa -3' miRNA: 3'- uCUuCCuCgaUGGCCGAGUC-CGCC-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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