miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2045 3' -59.3 NC_001347.2 + 1265 0.66 0.868704
Target:  5'- cGAcgcGGGcacgcuGCUGCC-GCUCGGaCGGCCg -3'
miRNA:   3'- uCU---UCCu-----CGAUGGcCGAGUCcGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 1718 0.73 0.485411
Target:  5'- cGGAcGGGAGCUgcGCCGGCggUGGGcCGGCa -3'
miRNA:   3'- -UCU-UCCUCGA--UGGCCGa-GUCC-GCCGg -5'
2045 3' -59.3 NC_001347.2 + 6183 0.68 0.734626
Target:  5'- uAGAcGGAGUgUAUCGaGCUCGccGGCGGCg -3'
miRNA:   3'- -UCUuCCUCG-AUGGC-CGAGU--CCGCCGg -5'
2045 3' -59.3 NC_001347.2 + 8781 0.73 0.467391
Target:  5'- cGAcGGcGgaGCCGGCUCAGaGCGGaCCa -3'
miRNA:   3'- uCUuCCuCgaUGGCCGAGUC-CGCC-GG- -5'
2045 3' -59.3 NC_001347.2 + 13512 0.68 0.734626
Target:  5'- --cGGGuGCUcACCcGC-CGGGCGGCCc -3'
miRNA:   3'- ucuUCCuCGA-UGGcCGaGUCCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 14298 0.69 0.715747
Target:  5'- cGccGGAGCUccccgcGCUGcCUguGGCGGCCg -3'
miRNA:   3'- uCuuCCUCGA------UGGCcGAguCCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 18187 0.71 0.579715
Target:  5'- cGAcuGGGAGaccgACgGGCUCuacgAGGUGGCCa -3'
miRNA:   3'- uCU--UCCUCga--UGgCCGAG----UCCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 20857 0.67 0.780259
Target:  5'- ---cGGGGCUGgCGuuUCuAGGUGGCCg -3'
miRNA:   3'- ucuuCCUCGAUgGCcgAG-UCCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 31106 0.68 0.774924
Target:  5'- ---cGGAGCgugcuccauugccgGCCGGCgucCAGGCuGCCc -3'
miRNA:   3'- ucuuCCUCGa-------------UGGCCGa--GUCCGcCGG- -5'
2045 3' -59.3 NC_001347.2 + 31654 0.67 0.822863
Target:  5'- gAGAAaGGGaUAgUGGCUCGGGuCGGCUg -3'
miRNA:   3'- -UCUUcCUCgAUgGCCGAGUCC-GCCGG- -5'
2045 3' -59.3 NC_001347.2 + 36378 0.7 0.618684
Target:  5'- cGGcAGGGGCaugcggccuUAgCGGCUCGGGCuGGCg -3'
miRNA:   3'- -UCuUCCUCG---------AUgGCCGAGUCCG-CCGg -5'
2045 3' -59.3 NC_001347.2 + 36667 0.75 0.390954
Target:  5'- cGucGGAGCUcagACCgGGCUCcggcGGGUGGCCu -3'
miRNA:   3'- uCuuCCUCGA---UGG-CCGAG----UCCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 37063 0.67 0.797718
Target:  5'- cGGAGGuGCUGgCGGC-CGuGGCcuguGGCCc -3'
miRNA:   3'- uCUUCCuCGAUgGCCGaGU-CCG----CCGG- -5'
2045 3' -59.3 NC_001347.2 + 38746 0.71 0.579715
Target:  5'- uGucGGAGC-GCCGGCUgAGGCaGCa -3'
miRNA:   3'- uCuuCCUCGaUGGCCGAgUCCGcCGg -5'
2045 3' -59.3 NC_001347.2 + 42904 0.67 0.779373
Target:  5'- cGGAgAGGAGCUguccgccGCCGGga-AGGUGGUCu -3'
miRNA:   3'- -UCU-UCCUCGA-------UGGCCgagUCCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 63070 0.68 0.725223
Target:  5'- cGGAGGA-CUGCCGGCgggugUGGGCucGGCa -3'
miRNA:   3'- uCUUCCUcGAUGGCCGa----GUCCG--CCGg -5'
2045 3' -59.3 NC_001347.2 + 66903 0.73 0.485411
Target:  5'- gGGGAGGAGCaGCUGGUguuUCGauugcGGCGGCa -3'
miRNA:   3'- -UCUUCCUCGaUGGCCG---AGU-----CCGCCGg -5'
2045 3' -59.3 NC_001347.2 + 75403 0.66 0.854142
Target:  5'- aAGcGGGAGCgg-CGGC-CGuGGCGGCg -3'
miRNA:   3'- -UCuUCCUCGaugGCCGaGU-CCGCCGg -5'
2045 3' -59.3 NC_001347.2 + 76162 0.68 0.75318
Target:  5'- -cGAGGGGUUGCgGauggaGCU-GGGCGGCCg -3'
miRNA:   3'- ucUUCCUCGAUGgC-----CGAgUCCGCCGG- -5'
2045 3' -59.3 NC_001347.2 + 77854 0.67 0.806246
Target:  5'- ---uGGcGCUGCU-GCUgCAGGUGGCCg -3'
miRNA:   3'- ucuuCCuCGAUGGcCGA-GUCCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.