Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 2045 | 3' | -59.3 | NC_001347.2 | + | 18187 | 0.71 | 0.579715 |
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Target: 5'- cGAcuGGGAGaccgACgGGCUCuacgAGGUGGCCa -3' miRNA: 3'- uCU--UCCUCga--UGgCCGAG----UCCGCCGG- -5' |
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| 2045 | 3' | -59.3 | NC_001347.2 | + | 14298 | 0.69 | 0.715747 |
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Target: 5'- cGccGGAGCUccccgcGCUGcCUguGGCGGCCg -3' miRNA: 3'- uCuuCCUCGA------UGGCcGAguCCGCCGG- -5' |
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| 2045 | 3' | -59.3 | NC_001347.2 | + | 13512 | 0.68 | 0.734626 |
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Target: 5'- --cGGGuGCUcACCcGC-CGGGCGGCCc -3' miRNA: 3'- ucuUCCuCGA-UGGcCGaGUCCGCCGG- -5' |
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| 2045 | 3' | -59.3 | NC_001347.2 | + | 8781 | 0.73 | 0.467391 |
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Target: 5'- cGAcGGcGgaGCCGGCUCAGaGCGGaCCa -3' miRNA: 3'- uCUuCCuCgaUGGCCGAGUC-CGCC-GG- -5' |
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| 2045 | 3' | -59.3 | NC_001347.2 | + | 6183 | 0.68 | 0.734626 |
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Target: 5'- uAGAcGGAGUgUAUCGaGCUCGccGGCGGCg -3' miRNA: 3'- -UCUuCCUCG-AUGGC-CGAGU--CCGCCGg -5' |
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| 2045 | 3' | -59.3 | NC_001347.2 | + | 1718 | 0.73 | 0.485411 |
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Target: 5'- cGGAcGGGAGCUgcGCCGGCggUGGGcCGGCa -3' miRNA: 3'- -UCU-UCCUCGA--UGGCCGa-GUCC-GCCGg -5' |
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| 2045 | 3' | -59.3 | NC_001347.2 | + | 1265 | 0.66 | 0.868704 |
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Target: 5'- cGAcgcGGGcacgcuGCUGCC-GCUCGGaCGGCCg -3' miRNA: 3'- uCU---UCCu-----CGAUGGcCGAGUCcGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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