Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 156763 | 0.85 | 0.089549 |
Target: 5'- gAGGAGGAGUUGCUGGCUCuggcgggagaagggaAGGCGGCa -3' miRNA: 3'- -UCUUCCUCGAUGGCCGAG---------------UCCGCCGg -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 77854 | 0.67 | 0.806246 |
Target: 5'- ---uGGcGCUGCU-GCUgCAGGUGGCCg -3' miRNA: 3'- ucuuCCuCGAUGGcCGA-GUCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 142526 | 0.67 | 0.786428 |
Target: 5'- cGGGAGGuGGCUgcuuucucgugaacGCCGGCgaagacgaggCuGGCGGCg -3' miRNA: 3'- -UCUUCC-UCGA--------------UGGCCGa---------GuCCGCCGg -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 20857 | 0.67 | 0.780259 |
Target: 5'- ---cGGGGCUGgCGuuUCuAGGUGGCCg -3' miRNA: 3'- ucuuCCUCGAUgGCcgAG-UCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 200090 | 0.67 | 0.780259 |
Target: 5'- gGGcGGGAcGUUauauagugaggGCCGGCUCcGGCGGgCa -3' miRNA: 3'- -UCuUCCU-CGA-----------UGGCCGAGuCCGCCgG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 31106 | 0.68 | 0.774924 |
Target: 5'- ---cGGAGCgugcuccauugccgGCCGGCgucCAGGCuGCCc -3' miRNA: 3'- ucuuCCUCGa-------------UGGCCGa--GUCCGcCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 42904 | 0.67 | 0.779373 |
Target: 5'- cGGAgAGGAGCUguccgccGCCGGga-AGGUGGUCu -3' miRNA: 3'- -UCU-UCCUCGA-------UGGCCgagUCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 135086 | 0.68 | 0.762314 |
Target: 5'- uGGAGGGGCgUACUgacgacaauugaGGUgUCAuGGCGGCCc -3' miRNA: 3'- uCUUCCUCG-AUGG------------CCG-AGU-CCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 188169 | 0.68 | 0.762314 |
Target: 5'- cGAAGcccacGCUGCCcGUUC-GGCGGCCg -3' miRNA: 3'- uCUUCcu---CGAUGGcCGAGuCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 37063 | 0.67 | 0.797718 |
Target: 5'- cGGAGGuGCUGgCGGC-CGuGGCcuguGGCCc -3' miRNA: 3'- uCUUCCuCGAUgGCCGaGU-CCG----CCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 31654 | 0.67 | 0.822863 |
Target: 5'- gAGAAaGGGaUAgUGGCUCGGGuCGGCUg -3' miRNA: 3'- -UCUUcCUCgAUgGCCGAGUCC-GCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 128796 | 0.67 | 0.822863 |
Target: 5'- ---uGGAGCUGCa--CUCAcGCGGCCg -3' miRNA: 3'- ucuuCCUCGAUGgccGAGUcCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 152019 | 0.66 | 0.841962 |
Target: 5'- gAGGAGGAGa-GCCGGCaaagaagaGGGCgcggaaaccaccgucGGCCg -3' miRNA: 3'- -UCUUCCUCgaUGGCCGag------UCCG---------------CCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 110184 | 0.66 | 0.851893 |
Target: 5'- --cAGGuGCU-UCGGCUCaucaccaacguggaAGGCGGCUc -3' miRNA: 3'- ucuUCCuCGAuGGCCGAG--------------UCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 75403 | 0.66 | 0.854142 |
Target: 5'- aAGcGGGAGCgg-CGGC-CGuGGCGGCg -3' miRNA: 3'- -UCuUCCUCGaugGCCGaGU-CCGCCGg -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 135874 | 0.66 | 0.841185 |
Target: 5'- gGGGAGGAGCgggGugggggugggaagccCCcGCUCGGGUccccccgGGCCa -3' miRNA: 3'- -UCUUCCUCGa--U---------------GGcCGAGUCCG-------CCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 113096 | 0.66 | 0.838846 |
Target: 5'- aAGAAcGGAcgGCgacGCUGGaagcgCAGGCGGCUg -3' miRNA: 3'- -UCUU-CCU--CGa--UGGCCga---GUCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 155114 | 0.66 | 0.830937 |
Target: 5'- -uGAGGAuuUACCuGGUaUgAGGCGGCCg -3' miRNA: 3'- ucUUCCUcgAUGG-CCG-AgUCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 79176 | 0.66 | 0.830937 |
Target: 5'- cAGAcgAGGAGCgGCgCGGCcCAGaGCgugucGGCCg -3' miRNA: 3'- -UCU--UCCUCGaUG-GCCGaGUC-CG-----CCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 207140 | 0.67 | 0.821229 |
Target: 5'- cGGAGGGGUguuuggcgagcCCGGaucCGGGCGGUCu -3' miRNA: 3'- uCUUCCUCGau---------GGCCga-GUCCGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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