Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2045 | 3' | -59.3 | NC_001347.2 | + | 135086 | 0.68 | 0.762314 |
Target: 5'- uGGAGGGGCgUACUgacgacaauugaGGUgUCAuGGCGGCCc -3' miRNA: 3'- uCUUCCUCG-AUGG------------CCG-AGU-CCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 42904 | 0.67 | 0.779373 |
Target: 5'- cGGAgAGGAGCUguccgccGCCGGga-AGGUGGUCu -3' miRNA: 3'- -UCU-UCCUCGA-------UGGCCgagUCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 31106 | 0.68 | 0.774924 |
Target: 5'- ---cGGAGCgugcuccauugccgGCCGGCgucCAGGCuGCCc -3' miRNA: 3'- ucuuCCUCGa-------------UGGCCGa--GUCCGcCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 200090 | 0.67 | 0.780259 |
Target: 5'- gGGcGGGAcGUUauauagugaggGCCGGCUCcGGCGGgCa -3' miRNA: 3'- -UCuUCCU-CGA-----------UGGCCGAGuCCGCCgG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 20857 | 0.67 | 0.780259 |
Target: 5'- ---cGGGGCUGgCGuuUCuAGGUGGCCg -3' miRNA: 3'- ucuuCCUCGAUgGCcgAG-UCCGCCGG- -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 142526 | 0.67 | 0.786428 |
Target: 5'- cGGGAGGuGGCUgcuuucucgugaacGCCGGCgaagacgaggCuGGCGGCg -3' miRNA: 3'- -UCUUCC-UCGA--------------UGGCCGa---------GuCCGCCGg -5' |
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2045 | 3' | -59.3 | NC_001347.2 | + | 1265 | 0.66 | 0.868704 |
Target: 5'- cGAcgcGGGcacgcuGCUGCC-GCUCGGaCGGCCg -3' miRNA: 3'- uCU---UCCu-----CGAUGGcCGAGUCcGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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