miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2045 5' -57 NC_001347.2 + 135388 0.66 0.93167
Target:  5'- -gGACC-CCcGGUCACgacugGCgGCCGg- -3'
miRNA:   3'- gaCUGGuGGaCCAGUGa----UGgCGGCaa -5'
2045 5' -57 NC_001347.2 + 78404 0.66 0.915738
Target:  5'- -gGGCCACgUcGGgcuGCUGCCGCCGc- -3'
miRNA:   3'- gaCUGGUGgA-CCag-UGAUGGCGGCaa -5'
2045 5' -57 NC_001347.2 + 115626 0.66 0.909975
Target:  5'- -gGACCagACgUGGUCGCgccgAUCGCUGUa -3'
miRNA:   3'- gaCUGG--UGgACCAGUGa---UGGCGGCAa -5'
2045 5' -57 NC_001347.2 + 63904 0.66 0.909975
Target:  5'- -cGACCACCguuaccaGUaccacCGCUGCCGCCGc- -3'
miRNA:   3'- gaCUGGUGGac-----CA-----GUGAUGGCGGCaa -5'
2045 5' -57 NC_001347.2 + 113452 0.67 0.903988
Target:  5'- aCUGugCACgUagcccGUCACggucgGCCGCCGUg -3'
miRNA:   3'- -GACugGUGgAc----CAGUGa----UGGCGGCAa -5'
2045 5' -57 NC_001347.2 + 193725 0.67 0.903988
Target:  5'- gCUGGCCugCgaGGaCACcGCCGCuCGUUg -3'
miRNA:   3'- -GACUGGugGa-CCaGUGaUGGCG-GCAA- -5'
2045 5' -57 NC_001347.2 + 200259 0.67 0.897779
Target:  5'- uCUGGCUAgCCUGG-CGCUcACgGCCGa- -3'
miRNA:   3'- -GACUGGU-GGACCaGUGA-UGgCGGCaa -5'
2045 5' -57 NC_001347.2 + 77845 0.67 0.877849
Target:  5'- -aGGCUaACCUGG-CGCUGCUGCUGc- -3'
miRNA:   3'- gaCUGG-UGGACCaGUGAUGGCGGCaa -5'
2045 5' -57 NC_001347.2 + 112562 0.67 0.877849
Target:  5'- aCUGACCAC--GGUgACcACCGUCGUa -3'
miRNA:   3'- -GACUGGUGgaCCAgUGaUGGCGGCAa -5'
2045 5' -57 NC_001347.2 + 97589 0.67 0.877849
Target:  5'- -cGGCCAaauaacgugUCUGGggccggUGCUGCCGCCGUc -3'
miRNA:   3'- gaCUGGU---------GGACCa-----GUGAUGGCGGCAa -5'
2045 5' -57 NC_001347.2 + 41375 0.67 0.870784
Target:  5'- uCUGGCgucagCACCUGGUUuuuuuACUcggaggccacgGCCGCCGUg -3'
miRNA:   3'- -GACUG-----GUGGACCAG-----UGA-----------UGGCGGCAa -5'
2045 5' -57 NC_001347.2 + 185754 0.67 0.870784
Target:  5'- uCUGGCCGCCUuucCACgUACCGCUGg- -3'
miRNA:   3'- -GACUGGUGGAccaGUG-AUGGCGGCaa -5'
2045 5' -57 NC_001347.2 + 193641 0.68 0.85605
Target:  5'- -cGACCAUCgGGccgagCugUGCCGCCGc- -3'
miRNA:   3'- gaCUGGUGGaCCa----GugAUGGCGGCaa -5'
2045 5' -57 NC_001347.2 + 177444 0.68 0.832522
Target:  5'- gCUGGCCuuUUGGUacuuuaGCUACCGCUGg- -3'
miRNA:   3'- -GACUGGugGACCAg-----UGAUGGCGGCaa -5'
2045 5' -57 NC_001347.2 + 83383 0.69 0.789951
Target:  5'- aUGAUCGCCU--UCAUgGCCGCCGUg -3'
miRNA:   3'- gACUGGUGGAccAGUGaUGGCGGCAa -5'
2045 5' -57 NC_001347.2 + 119062 0.7 0.724928
Target:  5'- --cACCACCUGGaUCAC-GCCGCUGa- -3'
miRNA:   3'- gacUGGUGGACC-AGUGaUGGCGGCaa -5'
2045 5' -57 NC_001347.2 + 187413 0.71 0.676037
Target:  5'- gUGACCACCUGG-CugUGCUaGaCCGUa -3'
miRNA:   3'- gACUGGUGGACCaGugAUGG-C-GGCAa -5'
2045 5' -57 NC_001347.2 + 80764 0.72 0.643235
Target:  5'- -gGGCgGCgUGGagggagaaacccgaUCACUACCGCCGUUa -3'
miRNA:   3'- gaCUGgUGgACC--------------AGUGAUGGCGGCAA- -5'
2045 5' -57 NC_001347.2 + 210000 0.72 0.616317
Target:  5'- -cGcACCGCCgGGUCGCgguCCGCCGg- -3'
miRNA:   3'- gaC-UGGUGGaCCAGUGau-GGCGGCaa -5'
2045 5' -57 NC_001347.2 + 88231 0.75 0.480781
Target:  5'- gCUGuCCGaggGGUCGCUGCCGCCGg- -3'
miRNA:   3'- -GACuGGUggaCCAGUGAUGGCGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.