Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20450 | 3' | -57.6 | NC_004688.1 | + | 10444 | 0.73 | 0.373812 |
Target: 5'- --gUCGCGgUAUUCCUCGCCGACCUUg -3' miRNA: 3'- uuaGGCGCaAUAGGGGGUGGCUGGGG- -5' |
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20450 | 3' | -57.6 | NC_004688.1 | + | 11881 | 0.66 | 0.790247 |
Target: 5'- -cUCgGUGUUgugAUCCUCgACCcACCCCg -3' miRNA: 3'- uuAGgCGCAA---UAGGGGgUGGcUGGGG- -5' |
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20450 | 3' | -57.6 | NC_004688.1 | + | 14293 | 0.72 | 0.425244 |
Target: 5'- cGAUgCGCcccaAUCCCCCGCCGGCUCg -3' miRNA: 3'- -UUAgGCGcaa-UAGGGGGUGGCUGGGg -5' |
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20450 | 3' | -57.6 | NC_004688.1 | + | 14745 | 0.68 | 0.641513 |
Target: 5'- --gUCGCcaUAUCCCCCG-CGACaCCCa -3' miRNA: 3'- uuaGGCGcaAUAGGGGGUgGCUG-GGG- -5' |
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20450 | 3' | -57.6 | NC_004688.1 | + | 21645 | 0.69 | 0.590061 |
Target: 5'- gGAUCUG-GUUGgagcgCCCgCCGCCGGCCUUg -3' miRNA: 3'- -UUAGGCgCAAUa----GGG-GGUGGCUGGGG- -5' |
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20450 | 3' | -57.6 | NC_004688.1 | + | 25326 | 0.69 | 0.579834 |
Target: 5'- -uUCUGCGUUgggcugccgcgGUCCUCCAUcgggCGACCCUc -3' miRNA: 3'- uuAGGCGCAA-----------UAGGGGGUG----GCUGGGG- -5' |
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20450 | 3' | -57.6 | NC_004688.1 | + | 32059 | 1.09 | 0.001497 |
Target: 5'- cAAUCCGCGUUAUCCCCCACCGACCCCu -3' miRNA: 3'- -UUAGGCGCAAUAGGGGGUGGCUGGGG- -5' |
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20450 | 3' | -57.6 | NC_004688.1 | + | 32456 | 0.68 | 0.682583 |
Target: 5'- -cUCgGCGUcAUCCCaCCAgaaCGugCCCg -3' miRNA: 3'- uuAGgCGCAaUAGGG-GGUg--GCugGGG- -5' |
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20450 | 3' | -57.6 | NC_004688.1 | + | 35005 | 0.67 | 0.742732 |
Target: 5'- --aUCGCGUUGUCCCgCAaCGcCUCCg -3' miRNA: 3'- uuaGGCGCAAUAGGGgGUgGCuGGGG- -5' |
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20450 | 3' | -57.6 | NC_004688.1 | + | 35469 | 0.69 | 0.628113 |
Target: 5'- --cCCGCGcgGUCCCacgCCACCaccgcgaacaccguGGCCCCc -3' miRNA: 3'- uuaGGCGCaaUAGGG---GGUGG--------------CUGGGG- -5' |
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20450 | 3' | -57.6 | NC_004688.1 | + | 35780 | 0.67 | 0.732898 |
Target: 5'- ---aCGaCGacg-CCCCC-CCGGCCCCg -3' miRNA: 3'- uuagGC-GCaauaGGGGGuGGCUGGGG- -5' |
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20450 | 3' | -57.6 | NC_004688.1 | + | 39161 | 0.66 | 0.799352 |
Target: 5'- --aCC-CGUUggCCCCggCACCG-CCCCg -3' miRNA: 3'- uuaGGcGCAAuaGGGG--GUGGCuGGGG- -5' |
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20450 | 3' | -57.6 | NC_004688.1 | + | 46762 | 0.69 | 0.620899 |
Target: 5'- --cUCGCGggAUCgCCCgGCgGGCCCUg -3' miRNA: 3'- uuaGGCGCaaUAG-GGGgUGgCUGGGG- -5' |
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20450 | 3' | -57.6 | NC_004688.1 | + | 47006 | 0.7 | 0.567613 |
Target: 5'- aGAUCCGCGgggcaagcgCUCCCACCacGCCUCg -3' miRNA: 3'- -UUAGGCGCaaua-----GGGGGUGGc-UGGGG- -5' |
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20450 | 3' | -57.6 | NC_004688.1 | + | 64184 | 0.67 | 0.742732 |
Target: 5'- --aCCagGCGgugaaCCCCCGCCGACCa- -3' miRNA: 3'- uuaGG--CGCaaua-GGGGGUGGCUGGgg -5' |
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20450 | 3' | -57.6 | NC_004688.1 | + | 70066 | 0.66 | 0.762098 |
Target: 5'- cAUCCcCGUgg-CCUCCACCGAUUCg -3' miRNA: 3'- uUAGGcGCAauaGGGGGUGGCUGGGg -5' |
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20450 | 3' | -57.6 | NC_004688.1 | + | 75067 | 0.67 | 0.752469 |
Target: 5'- -uUCCGCGgacuUAUCCCaguaggugaugCCGCC-ACCCUu -3' miRNA: 3'- uuAGGCGCa---AUAGGG-----------GGUGGcUGGGG- -5' |
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20450 | 3' | -57.6 | NC_004688.1 | + | 75576 | 0.69 | 0.579834 |
Target: 5'- --gCCGCGgacUCCUCCgGCUGACCCg -3' miRNA: 3'- uuaGGCGCaauAGGGGG-UGGCUGGGg -5' |
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20450 | 3' | -57.6 | NC_004688.1 | + | 77900 | 0.66 | 0.780996 |
Target: 5'- gAAUUCGgGcaUAUCCCCCGCCaggGACCa- -3' miRNA: 3'- -UUAGGCgCa-AUAGGGGGUGG---CUGGgg -5' |
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20450 | 3' | -57.6 | NC_004688.1 | + | 81054 | 0.67 | 0.712972 |
Target: 5'- --aCCGUGcuccaggacaUUcgCCgCCACCGugCCCa -3' miRNA: 3'- uuaGGCGC----------AAuaGGgGGUGGCugGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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