miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20451 5' -53.4 NC_004688.1 + 47343 0.66 0.953767
Target:  5'- --cGUGGgCgcCGCCGCAgCCGaAGCCc -3'
miRNA:   3'- cguUACUgGaaGCGGCGUgGGC-UUGG- -5'
20451 5' -53.4 NC_004688.1 + 57454 0.66 0.953767
Target:  5'- gGCAGUGuagagUC-CgCGCGCCCGAGCg -3'
miRNA:   3'- -CGUUACugga-AGcG-GCGUGGGCUUGg -5'
20451 5' -53.4 NC_004688.1 + 68666 0.66 0.953359
Target:  5'- uGCaAGUGGCCgccCGCUGCugccucugcgucuAUCCGAuaGCCg -3'
miRNA:   3'- -CG-UUACUGGaa-GCGGCG-------------UGGGCU--UGG- -5'
20451 5' -53.4 NC_004688.1 + 49383 0.66 0.949575
Target:  5'- gGCGuu--CCaugUCGCCGUuggccauuCCCGGGCCg -3'
miRNA:   3'- -CGUuacuGGa--AGCGGCGu-------GGGCUUGG- -5'
20451 5' -53.4 NC_004688.1 + 54978 0.66 0.949575
Target:  5'- gGCAGgggcgGGCCagcaaagugUUUGCUGCAgcacCCCGAguGCCg -3'
miRNA:   3'- -CGUUa----CUGG---------AAGCGGCGU----GGGCU--UGG- -5'
20451 5' -53.4 NC_004688.1 + 30925 0.66 0.945137
Target:  5'- gGCA--GGCCgg-GCC-CGCCCGGAUCg -3'
miRNA:   3'- -CGUuaCUGGaagCGGcGUGGGCUUGG- -5'
20451 5' -53.4 NC_004688.1 + 78820 0.66 0.945137
Target:  5'- gGCAAggguUGACU--UGCCuaGCCCGGGCg -3'
miRNA:   3'- -CGUU----ACUGGaaGCGGcgUGGGCUUGg -5'
20451 5' -53.4 NC_004688.1 + 4214 0.66 0.940451
Target:  5'- ----aGACCUcagCGCCGCggGCgCCGAGgCCc -3'
miRNA:   3'- cguuaCUGGAa--GCGGCG--UG-GGCUU-GG- -5'
20451 5' -53.4 NC_004688.1 + 75517 0.66 0.935513
Target:  5'- gGCGAUGGCCgaguucaggUCGCUcggGguCCagGAGCCg -3'
miRNA:   3'- -CGUUACUGGa--------AGCGG---CguGGg-CUUGG- -5'
20451 5' -53.4 NC_004688.1 + 97939 0.66 0.935513
Target:  5'- ----aGGCCUuucacgUCGCCGCAgUCGAcgcacucccGCCg -3'
miRNA:   3'- cguuaCUGGA------AGCGGCGUgGGCU---------UGG- -5'
20451 5' -53.4 NC_004688.1 + 35616 0.66 0.935513
Target:  5'- cCGGUGGCCUUCaucuggcgaGCaaCGCCgGAGCCu -3'
miRNA:   3'- cGUUACUGGAAG---------CGgcGUGGgCUUGG- -5'
20451 5' -53.4 NC_004688.1 + 75589 0.67 0.93243
Target:  5'- cGgGGUG-UCggcCGCCGCggacuccuccggcugACCCGAGCCa -3'
miRNA:   3'- -CgUUACuGGaa-GCGGCG---------------UGGGCUUGG- -5'
20451 5' -53.4 NC_004688.1 + 88318 0.67 0.930324
Target:  5'- cGCAucagGGCC--CGCCGCGCugCCGA-CCu -3'
miRNA:   3'- -CGUua--CUGGaaGCGGCGUG--GGCUuGG- -5'
20451 5' -53.4 NC_004688.1 + 7309 0.67 0.930324
Target:  5'- -gGGUGcGCuCUUCGCUGgGCCCGGAg- -3'
miRNA:   3'- cgUUAC-UG-GAAGCGGCgUGGGCUUgg -5'
20451 5' -53.4 NC_004688.1 + 28287 0.67 0.930324
Target:  5'- -gGGUGaaGCCgUCGCCGCAUuccaugCCGAAgCCg -3'
miRNA:   3'- cgUUAC--UGGaAGCGGCGUG------GGCUU-GG- -5'
20451 5' -53.4 NC_004688.1 + 5251 0.67 0.924881
Target:  5'- cGCAuUGGug-UCGCCGuCGCCC-AGCCa -3'
miRNA:   3'- -CGUuACUggaAGCGGC-GUGGGcUUGG- -5'
20451 5' -53.4 NC_004688.1 + 35226 0.67 0.924881
Target:  5'- uGCAgcGUGAa---UGUCGCACCCGAGuCCc -3'
miRNA:   3'- -CGU--UACUggaaGCGGCGUGGGCUU-GG- -5'
20451 5' -53.4 NC_004688.1 + 69439 0.67 0.924881
Target:  5'- aGCGGUGACCca-GCCgugacauccacGCACgCCGucGCCa -3'
miRNA:   3'- -CGUUACUGGaagCGG-----------CGUG-GGCu-UGG- -5'
20451 5' -53.4 NC_004688.1 + 21323 0.67 0.921493
Target:  5'- gGCGGUGAaaCCgaaguaUUCgGCCGCcugcuccuuggcuuCCCGAACCg -3'
miRNA:   3'- -CGUUACU--GG------AAG-CGGCGu-------------GGGCUUGG- -5'
20451 5' -53.4 NC_004688.1 + 1340 0.67 0.919184
Target:  5'- cGCGAUGAUgUaUGCCuaGCCCcgagagacGAACCa -3'
miRNA:   3'- -CGUUACUGgAaGCGGcgUGGG--------CUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.