miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20454 3' -61.6 NC_004688.1 + 73533 0.66 0.642345
Target:  5'- gGCCaGCCGagcuUUGCCGcACGCCugCGa -3'
miRNA:   3'- -CGG-CGGCgccuAGCGGC-UGUGGugGC- -5'
20454 3' -61.6 NC_004688.1 + 102454 0.66 0.642345
Target:  5'- cGCauggGCCGCGaacGAUgagGCCGACGCUAUCGc -3'
miRNA:   3'- -CGg---CGGCGC---CUAg--CGGCUGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 48979 0.66 0.642345
Target:  5'- gGCCGCCcagcucGUGGAgaugcucggCGUCGACGuggaCACCGu -3'
miRNA:   3'- -CGGCGG------CGCCUa--------GCGGCUGUg---GUGGC- -5'
20454 3' -61.6 NC_004688.1 + 27517 0.66 0.641353
Target:  5'- aGuuGaCCGCGGAuucggucUCGCacACACCAUCGc -3'
miRNA:   3'- -CggC-GGCGCCU-------AGCGgcUGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 43881 0.66 0.639368
Target:  5'- aGCuCGCgCGCGaGAUcCGCCccgaagccgggaccGGCACCGuCCGg -3'
miRNA:   3'- -CG-GCG-GCGC-CUA-GCGG--------------CUGUGGU-GGC- -5'
20454 3' -61.6 NC_004688.1 + 2656 0.66 0.63242
Target:  5'- aCCGCCgGCGGcAUCGuaGAcCACCAgauCCGc -3'
miRNA:   3'- cGGCGG-CGCC-UAGCggCU-GUGGU---GGC- -5'
20454 3' -61.6 NC_004688.1 + 27319 0.66 0.631427
Target:  5'- uGCCGUCGCGGGUguauccgCGCUGAaGCUugUc -3'
miRNA:   3'- -CGGCGGCGCCUA-------GCGGCUgUGGugGc -5'
20454 3' -61.6 NC_004688.1 + 30807 0.66 0.631427
Target:  5'- uGCCaGCCGagaagaaCGGcagcUCGCCGAaGCCGCCc -3'
miRNA:   3'- -CGG-CGGC-------GCCu---AGCGGCUgUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 83356 0.66 0.622494
Target:  5'- gGCUGCUGCuccUCGUCGAUAuCCACCc -3'
miRNA:   3'- -CGGCGGCGccuAGCGGCUGU-GGUGGc -5'
20454 3' -61.6 NC_004688.1 + 25316 0.66 0.622494
Target:  5'- gGCUGCCGCGGuccuccAUCgGgCGAC-CCuCCGg -3'
miRNA:   3'- -CGGCGGCGCC------UAG-CgGCUGuGGuGGC- -5'
20454 3' -61.6 NC_004688.1 + 27698 0.66 0.622494
Target:  5'- uCCGCCGCGGAggCGggauacgagaUCGACgaagugaguugGCCAUCGa -3'
miRNA:   3'- cGGCGGCGCCUa-GC----------GGCUG-----------UGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 98341 0.66 0.622494
Target:  5'- aGCUcCCGCcaGUCGUCGACGCC-CCa -3'
miRNA:   3'- -CGGcGGCGccUAGCGGCUGUGGuGGc -5'
20454 3' -61.6 NC_004688.1 + 49974 0.66 0.622494
Target:  5'- aCgGCUGCGGGUCGgCGAaaucaaGCCcugguACCGg -3'
miRNA:   3'- cGgCGGCGCCUAGCgGCUg-----UGG-----UGGC- -5'
20454 3' -61.6 NC_004688.1 + 29501 0.66 0.612576
Target:  5'- uCCGUCGCuccccGGGUCuGCCGACAaaacggUACCGa -3'
miRNA:   3'- cGGCGGCG-----CCUAG-CGGCUGUg-----GUGGC- -5'
20454 3' -61.6 NC_004688.1 + 27436 0.66 0.612576
Target:  5'- cGUCGUCGCGauuGAauUCGUCGAuCGCCAUCu -3'
miRNA:   3'- -CGGCGGCGC---CU--AGCGGCU-GUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 16621 0.66 0.611585
Target:  5'- cCCGCCGCGuuacaacuccacaGAuUUGCCGGgGCCAaauCCGa -3'
miRNA:   3'- cGGCGGCGC-------------CU-AGCGGCUgUGGU---GGC- -5'
20454 3' -61.6 NC_004688.1 + 27909 0.66 0.609603
Target:  5'- gGUgGCCGUGGuuccgggcgaacccGUCGCCGugGuCCugACCGu -3'
miRNA:   3'- -CGgCGGCGCC--------------UAGCGGCugU-GG--UGGC- -5'
20454 3' -61.6 NC_004688.1 + 66189 0.66 0.602671
Target:  5'- -aCGcCCGUGGGcUUGaCCGGCACCugCu -3'
miRNA:   3'- cgGC-GGCGCCU-AGC-GGCUGUGGugGc -5'
20454 3' -61.6 NC_004688.1 + 9561 0.66 0.592787
Target:  5'- uGCCGCC-CGGAggucuucuUCGCuCGACucuUCugCGg -3'
miRNA:   3'- -CGGCGGcGCCU--------AGCG-GCUGu--GGugGC- -5'
20454 3' -61.6 NC_004688.1 + 5256 0.66 0.592787
Target:  5'- cGCC-CCGCauuGGuGUCGCCGuCGCCcaGCCa -3'
miRNA:   3'- -CGGcGGCG---CC-UAGCGGCuGUGG--UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.