miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20454 3' -61.6 NC_004688.1 + 48748 0.67 0.53426
Target:  5'- uCCGCCGCc-AUCGCCGAgaaGCUGCUGg -3'
miRNA:   3'- cGGCGGCGccUAGCGGCUg--UGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 102353 0.67 0.53426
Target:  5'- gGCCGgucuaCUGCGaGggCGaCGACACCGCCa -3'
miRNA:   3'- -CGGC-----GGCGC-CuaGCgGCUGUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 23005 0.67 0.53426
Target:  5'- gGCCGUgacaaCGGcuuccAUCGCCGAUGCCAUCGu -3'
miRNA:   3'- -CGGCGgc---GCC-----UAGCGGCUGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 55662 0.67 0.53426
Target:  5'- gGCgCGCCacugaGGG-CGCUGACACCACUu -3'
miRNA:   3'- -CG-GCGGcg---CCUaGCGGCUGUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 36914 0.67 0.5333
Target:  5'- aCCGUcuccaggCGCGGA-CGCCGACaggcuugccgaACCACUGu -3'
miRNA:   3'- cGGCG-------GCGCCUaGCGGCUG-----------UGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 89694 0.67 0.571145
Target:  5'- uCCGCCGCGGcAgccuuggccuucuccUCGCCGACaaacgacaaaagggaGCC-CCa -3'
miRNA:   3'- cGGCGGCGCC-U---------------AGCGGCUG---------------UGGuGGc -5'
20454 3' -61.6 NC_004688.1 + 63885 0.67 0.582929
Target:  5'- gGCCGaCCGCGGugaaugCGgUGGCAaccgCGCCGg -3'
miRNA:   3'- -CGGC-GGCGCCua----GCgGCUGUg---GUGGC- -5'
20454 3' -61.6 NC_004688.1 + 90835 0.67 0.582929
Target:  5'- cGUCGCUccacaccuuuuuGCGGGcgCGCUGcUGCCACCGg -3'
miRNA:   3'- -CGGCGG------------CGCCUa-GCGGCuGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 26243 0.67 0.563321
Target:  5'- cCCGCgGCGGuuugaccCGCCucGAgGCCGCCa -3'
miRNA:   3'- cGGCGgCGCCua-----GCGG--CUgUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 26115 0.67 0.547762
Target:  5'- aCCGcCCGCGGcgcccaaccCGCCGAacaggccggguagacCACCGCCa -3'
miRNA:   3'- cGGC-GGCGCCua-------GCGGCU---------------GUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 17274 0.67 0.553581
Target:  5'- -gCGCaGCGGugauucguagucGUCGCCGACAUCgACCa -3'
miRNA:   3'- cgGCGgCGCC------------UAGCGGCUGUGG-UGGc -5'
20454 3' -61.6 NC_004688.1 + 7893 0.67 0.553581
Target:  5'- uCCGCU-CGGGuUCGCCGAgucgcggaACCACCGc -3'
miRNA:   3'- cGGCGGcGCCU-AGCGGCUg-------UGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 100848 0.67 0.553581
Target:  5'- uGCCGcCCGaCGGcaAUCGgaCGGCACCcgacACCGg -3'
miRNA:   3'- -CGGC-GGC-GCC--UAGCg-GCUGUGG----UGGC- -5'
20454 3' -61.6 NC_004688.1 + 83153 0.67 0.56723
Target:  5'- uGuuG-CGCGGGUgaugcacccacuucuUGCCGGCGCgCACCGc -3'
miRNA:   3'- -CggCgGCGCCUA---------------GCGGCUGUG-GUGGC- -5'
20454 3' -61.6 NC_004688.1 + 11570 0.67 0.53426
Target:  5'- uCUGCCGCuGGAUCGCuugccCGAaguugucCCACCGa -3'
miRNA:   3'- cGGCGGCG-CCUAGCG-----GCUgu-----GGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 14153 0.67 0.572125
Target:  5'- cGCCGUagCGCGGcUCGgCGAUgauguagACCGCCc -3'
miRNA:   3'- -CGGCG--GCGCCuAGCgGCUG-------UGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 58807 0.67 0.573106
Target:  5'- cGgCGCCGgGGccAUCGCC---ACCACCGc -3'
miRNA:   3'- -CgGCGGCgCC--UAGCGGcugUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 29717 0.67 0.581945
Target:  5'- cGCCaGCaGCGGGUCGuugcCCGGCuggggaucacccgGCCGCCa -3'
miRNA:   3'- -CGG-CGgCGCCUAGC----GGCUG-------------UGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 96540 0.67 0.582929
Target:  5'- aCCGCCccacuucagucgGCGGGggccaGCCGACGCaauCCGa -3'
miRNA:   3'- cGGCGG------------CGCCUag---CGGCUGUGgu-GGC- -5'
20454 3' -61.6 NC_004688.1 + 93485 0.67 0.582929
Target:  5'- cCCGCCGCGGccgggcguGagGUCG-CACCACgGg -3'
miRNA:   3'- cGGCGGCGCC--------UagCGGCuGUGGUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.