Results 41 - 60 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 7377 | 0.68 | 0.515183 |
Target: 5'- gGCCcCCGgGcGAUCGCCGuGCAUgGCCc -3' miRNA: 3'- -CGGcGGCgC-CUAGCGGC-UGUGgUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 25068 | 0.68 | 0.515183 |
Target: 5'- uCCGCCGgGGAcUGCCcuggaGCCGCCa -3' miRNA: 3'- cGGCGGCgCCUaGCGGcug--UGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 61945 | 0.68 | 0.515183 |
Target: 5'- uGCCG-CGCGGGUCGUCcauGGCcuuGCCGCgGa -3' miRNA: 3'- -CGGCgGCGCCUAGCGG---CUG---UGGUGgC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 81226 | 0.68 | 0.515183 |
Target: 5'- uGCCGCCGaaGAUuuucUGCC--CACCGCCGu -3' miRNA: 3'- -CGGCGGCgcCUA----GCGGcuGUGGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 30403 | 0.68 | 0.509513 |
Target: 5'- aCCGuuGCGGAuaauggUCGCCagGGCGCCcgggaacaggucgcgGCCGa -3' miRNA: 3'- cGGCggCGCCU------AGCGG--CUGUGG---------------UGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 44331 | 0.68 | 0.505748 |
Target: 5'- gGCCGCaGCGuagaGGUCGCCGGCGuuGgCGa -3' miRNA: 3'- -CGGCGgCGC----CUAGCGGCUGUggUgGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 61819 | 0.68 | 0.477907 |
Target: 5'- aGuuGCCGCGGGgcUCGUCGGaGCUGCgGg -3' miRNA: 3'- -CggCGGCGCCU--AGCGGCUgUGGUGgC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 25432 | 0.68 | 0.468795 |
Target: 5'- uCCGCCGaacg-CGCCGGgGCCGCUGa -3' miRNA: 3'- cGGCGGCgccuaGCGGCUgUGGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 26115 | 0.67 | 0.547762 |
Target: 5'- aCCGcCCGCGGcgcccaaccCGCCGAacaggccggguagacCACCGCCa -3' miRNA: 3'- cGGC-GGCGCCua-------GCGGCU---------------GUGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 17274 | 0.67 | 0.553581 |
Target: 5'- -gCGCaGCGGugauucguagucGUCGCCGACAUCgACCa -3' miRNA: 3'- cgGCGgCGCC------------UAGCGGCUGUGG-UGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 7893 | 0.67 | 0.553581 |
Target: 5'- uCCGCU-CGGGuUCGCCGAgucgcggaACCACCGc -3' miRNA: 3'- cGGCGGcGCCU-AGCGGCUg-------UGGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 100848 | 0.67 | 0.553581 |
Target: 5'- uGCCGcCCGaCGGcaAUCGgaCGGCACCcgacACCGg -3' miRNA: 3'- -CGGC-GGC-GCC--UAGCg-GCUGUGG----UGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 26243 | 0.67 | 0.563321 |
Target: 5'- cCCGCgGCGGuuugaccCGCCucGAgGCCGCCa -3' miRNA: 3'- cGGCGgCGCCua-----GCGG--CUgUGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 110858 | 0.67 | 0.543893 |
Target: 5'- aGCCGCCgGCGG-UCGaacauacuuUCGAC-CCGCCc -3' miRNA: 3'- -CGGCGG-CGCCuAGC---------GGCUGuGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 11570 | 0.67 | 0.53426 |
Target: 5'- uCUGCCGCuGGAUCGCuugccCGAaguugucCCACCGa -3' miRNA: 3'- cGGCGGCG-CCUAGCG-----GCUgu-----GGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 48748 | 0.67 | 0.53426 |
Target: 5'- uCCGCCGCc-AUCGCCGAgaaGCUGCUGg -3' miRNA: 3'- cGGCGGCGccUAGCGGCUg--UGGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 102353 | 0.67 | 0.53426 |
Target: 5'- gGCCGgucuaCUGCGaGggCGaCGACACCGCCa -3' miRNA: 3'- -CGGC-----GGCGC-CuaGCgGCUGUGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 23005 | 0.67 | 0.53426 |
Target: 5'- gGCCGUgacaaCGGcuuccAUCGCCGAUGCCAUCGu -3' miRNA: 3'- -CGGCGgc---GCC-----UAGCGGCUGUGGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 55662 | 0.67 | 0.53426 |
Target: 5'- gGCgCGCCacugaGGG-CGCUGACACCACUu -3' miRNA: 3'- -CG-GCGGcg---CCUaGCGGCUGUGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 83153 | 0.67 | 0.56723 |
Target: 5'- uGuuG-CGCGGGUgaugcacccacuucuUGCCGGCGCgCACCGc -3' miRNA: 3'- -CggCgGCGCCUA---------------GCGGCUGUG-GUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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