Results 61 - 80 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 36914 | 0.67 | 0.5333 |
Target: 5'- aCCGUcuccaggCGCGGA-CGCCGACaggcuugccgaACCACUGu -3' miRNA: 3'- cGGCG-------GCGCCUaGCGGCUG-----------UGGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 55662 | 0.67 | 0.53426 |
Target: 5'- gGCgCGCCacugaGGG-CGCUGACACCACUu -3' miRNA: 3'- -CG-GCGGcg---CCUaGCGGCUGUGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 23005 | 0.67 | 0.53426 |
Target: 5'- gGCCGUgacaaCGGcuuccAUCGCCGAUGCCAUCGu -3' miRNA: 3'- -CGGCGgc---GCC-----UAGCGGCUGUGGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 102353 | 0.67 | 0.53426 |
Target: 5'- gGCCGgucuaCUGCGaGggCGaCGACACCGCCa -3' miRNA: 3'- -CGGC-----GGCGC-CuaGCgGCUGUGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 48748 | 0.67 | 0.53426 |
Target: 5'- uCCGCCGCc-AUCGCCGAgaaGCUGCUGg -3' miRNA: 3'- cGGCGGCGccUAGCGGCUg--UGGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 11570 | 0.67 | 0.53426 |
Target: 5'- uCUGCCGCuGGAUCGCuugccCGAaguugucCCACCGa -3' miRNA: 3'- cGGCGGCG-CCUAGCG-----GCUgu-----GGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 110858 | 0.67 | 0.543893 |
Target: 5'- aGCCGCCgGCGG-UCGaacauacuuUCGAC-CCGCCc -3' miRNA: 3'- -CGGCGG-CGCCuAGC---------GGCUGuGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 26115 | 0.67 | 0.547762 |
Target: 5'- aCCGcCCGCGGcgcccaaccCGCCGAacaggccggguagacCACCGCCa -3' miRNA: 3'- cGGC-GGCGCCua-------GCGGCU---------------GUGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 17274 | 0.67 | 0.553581 |
Target: 5'- -gCGCaGCGGugauucguagucGUCGCCGACAUCgACCa -3' miRNA: 3'- cgGCGgCGCC------------UAGCGGCUGUGG-UGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 27698 | 0.66 | 0.622494 |
Target: 5'- uCCGCCGCGGAggCGggauacgagaUCGACgaagugaguugGCCAUCGa -3' miRNA: 3'- cGGCGGCGCCUa-GC----------GGCUG-----------UGGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 83356 | 0.66 | 0.622494 |
Target: 5'- gGCUGCUGCuccUCGUCGAUAuCCACCc -3' miRNA: 3'- -CGGCGGCGccuAGCGGCUGU-GGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 98341 | 0.66 | 0.622494 |
Target: 5'- aGCUcCCGCcaGUCGUCGACGCC-CCa -3' miRNA: 3'- -CGGcGGCGccUAGCGGCUGUGGuGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 49974 | 0.66 | 0.622494 |
Target: 5'- aCgGCUGCGGGUCGgCGAaaucaaGCCcugguACCGg -3' miRNA: 3'- cGgCGGCGCCUAGCgGCUg-----UGG-----UGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 27436 | 0.66 | 0.612576 |
Target: 5'- cGUCGUCGCGauuGAauUCGUCGAuCGCCAUCu -3' miRNA: 3'- -CGGCGGCGC---CU--AGCGGCU-GUGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 29501 | 0.66 | 0.612576 |
Target: 5'- uCCGUCGCuccccGGGUCuGCCGACAaaacggUACCGa -3' miRNA: 3'- cGGCGGCG-----CCUAG-CGGCUGUg-----GUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 16621 | 0.66 | 0.611585 |
Target: 5'- cCCGCCGCGuuacaacuccacaGAuUUGCCGGgGCCAaauCCGa -3' miRNA: 3'- cGGCGGCGC-------------CU-AGCGGCUgUGGU---GGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 27909 | 0.66 | 0.609603 |
Target: 5'- gGUgGCCGUGGuuccgggcgaacccGUCGCCGugGuCCugACCGu -3' miRNA: 3'- -CGgCGGCGCC--------------UAGCGGCugU-GG--UGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 66189 | 0.66 | 0.602671 |
Target: 5'- -aCGcCCGUGGGcUUGaCCGGCACCugCu -3' miRNA: 3'- cgGC-GGCGCCU-AGC-GGCUGUGGugGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 5256 | 0.66 | 0.592787 |
Target: 5'- cGCC-CCGCauuGGuGUCGCCGuCGCCcaGCCa -3' miRNA: 3'- -CGGcGGCG---CC-UAGCGGCuGUGG--UGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 102454 | 0.66 | 0.642345 |
Target: 5'- cGCauggGCCGCGaacGAUgagGCCGACGCUAUCGc -3' miRNA: 3'- -CGg---CGGCGC---CUAg--CGGCUGUGGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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