miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20454 3' -61.6 NC_004688.1 + 24857 0.7 0.375086
Target:  5'- aGCCGUgGCGaGGUUGCCGACGagucgaACCa -3'
miRNA:   3'- -CGGCGgCGC-CUAGCGGCUGUgg----UGGc -5'
20454 3' -61.6 NC_004688.1 + 61168 0.7 0.375086
Target:  5'- gGgUGUCGUGGucgCGCCGGC-CCACCa -3'
miRNA:   3'- -CgGCGGCGCCua-GCGGCUGuGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 78930 0.7 0.391166
Target:  5'- aGCUGCCGCGGAcgGUCGGCugCAa-- -3'
miRNA:   3'- -CGGCGGCGCCUagCGGCUGugGUggc -5'
20454 3' -61.6 NC_004688.1 + 96610 0.7 0.402687
Target:  5'- cCCGCC-CGGAcucgaaccgagacgCGCCGAaauUACCGCCGg -3'
miRNA:   3'- cGGCGGcGCCUa-------------GCGGCU---GUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 6470 0.7 0.406853
Target:  5'- aGUCGCCGCcacuugucgagugGGAUCuCCGACAUuucagCGCCGa -3'
miRNA:   3'- -CGGCGGCG-------------CCUAGcGGCUGUG-----GUGGC- -5'
20454 3' -61.6 NC_004688.1 + 25741 0.7 0.40769
Target:  5'- cCCGCCG-GGGcCGCCuugGGgGCCGCCGg -3'
miRNA:   3'- cGGCGGCgCCUaGCGG---CUgUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 41615 0.7 0.40769
Target:  5'- cGCCGCCGCccggaccgugguGGAaCGCCaGuuuCGCCGCUGc -3'
miRNA:   3'- -CGGCGGCG------------CCUaGCGG-Cu--GUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 99864 0.7 0.40769
Target:  5'- uGCCGCaucuGCuGGUgGCUGGCGCgACCGg -3'
miRNA:   3'- -CGGCGg---CGcCUAgCGGCUGUGgUGGC- -5'
20454 3' -61.6 NC_004688.1 + 1117 0.69 0.416114
Target:  5'- uCCGuaGCGGAUUGCC-ACGCgCACCu -3'
miRNA:   3'- cGGCggCGCCUAGCGGcUGUG-GUGGc -5'
20454 3' -61.6 NC_004688.1 + 33343 0.69 0.424643
Target:  5'- aUCGCCcgaGCGGGUCaCCGACGCCuuCGc -3'
miRNA:   3'- cGGCGG---CGCCUAGcGGCUGUGGugGC- -5'
20454 3' -61.6 NC_004688.1 + 16317 0.69 0.424643
Target:  5'- gGCCGa-GaaGGUgGCCGACGCCACCc -3'
miRNA:   3'- -CGGCggCgcCUAgCGGCUGUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 51976 0.69 0.442011
Target:  5'- cGCCGCUGCccuucUCGCUGcCGCCGCUGc -3'
miRNA:   3'- -CGGCGGCGccu--AGCGGCuGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 65701 0.69 0.442011
Target:  5'- -aCGCCG-GGGUCGcCCGGCGCCuagcuugcgGCCu -3'
miRNA:   3'- cgGCGGCgCCUAGC-GGCUGUGG---------UGGc -5'
20454 3' -61.6 NC_004688.1 + 7845 0.69 0.442011
Target:  5'- gGCCGCCagccccagGCcGAUgGCCGAaGCCGCCu -3'
miRNA:   3'- -CGGCGG--------CGcCUAgCGGCUgUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 70788 0.69 0.450844
Target:  5'- cCCGUCGac-AUUGCUGACACCAUCGg -3'
miRNA:   3'- cGGCGGCgccUAGCGGCUGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 51686 0.69 0.450844
Target:  5'- -aUGaUCGCGGuucagCGCCGACACCGgCGg -3'
miRNA:   3'- cgGC-GGCGCCua---GCGGCUGUGGUgGC- -5'
20454 3' -61.6 NC_004688.1 + 33926 0.69 0.459773
Target:  5'- aGCCGCCaccaGGAgCGCCauUGCCGCCGg -3'
miRNA:   3'- -CGGCGGcg--CCUaGCGGcuGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 44252 0.69 0.459773
Target:  5'- gGCCGCaagcaGuCGGGgcCGgCGAUGCCGCCGg -3'
miRNA:   3'- -CGGCGg----C-GCCUa-GCgGCUGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 21048 0.69 0.459773
Target:  5'- cGCCGaaaCGCGGAUCGugaCCGugGCaguGCCc -3'
miRNA:   3'- -CGGCg--GCGCCUAGC---GGCugUGg--UGGc -5'
20454 3' -61.6 NC_004688.1 + 25432 0.68 0.468795
Target:  5'- uCCGCCGaacg-CGCCGGgGCCGCUGa -3'
miRNA:   3'- cGGCGGCgccuaGCGGCUgUGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.