Results 61 - 80 of 89 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 83153 | 0.67 | 0.56723 |
Target: 5'- uGuuG-CGCGGGUgaugcacccacuucuUGCCGGCGCgCACCGc -3' miRNA: 3'- -CggCgGCGCCUA---------------GCGGCUGUG-GUGGC- -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 89694 | 0.67 | 0.571145 |
Target: 5'- uCCGCCGCGGcAgccuuggccuucuccUCGCCGACaaacgacaaaagggaGCC-CCa -3' miRNA: 3'- cGGCGGCGCC-U---------------AGCGGCUG---------------UGGuGGc -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 14153 | 0.67 | 0.572125 |
Target: 5'- cGCCGUagCGCGGcUCGgCGAUgauguagACCGCCc -3' miRNA: 3'- -CGGCG--GCGCCuAGCgGCUG-------UGGUGGc -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 58807 | 0.67 | 0.573106 |
Target: 5'- cGgCGCCGgGGccAUCGCC---ACCACCGc -3' miRNA: 3'- -CgGCGGCgCC--UAGCGGcugUGGUGGC- -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 29717 | 0.67 | 0.581945 |
Target: 5'- cGCCaGCaGCGGGUCGuugcCCGGCuggggaucacccgGCCGCCa -3' miRNA: 3'- -CGG-CGgCGCCUAGC----GGCUG-------------UGGUGGc -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 96540 | 0.67 | 0.582929 |
Target: 5'- aCCGCCccacuucagucgGCGGGggccaGCCGACGCaauCCGa -3' miRNA: 3'- cGGCGG------------CGCCUag---CGGCUGUGgu-GGC- -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 93485 | 0.67 | 0.582929 |
Target: 5'- cCCGCCGCGGccgggcguGagGUCG-CACCACgGg -3' miRNA: 3'- cGGCGGCGCC--------UagCGGCuGUGGUGgC- -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 90835 | 0.67 | 0.582929 |
Target: 5'- cGUCGCUccacaccuuuuuGCGGGcgCGCUGcUGCCACCGg -3' miRNA: 3'- -CGGCGG------------CGCCUa-GCGGCuGUGGUGGC- -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 63885 | 0.67 | 0.582929 |
Target: 5'- gGCCGaCCGCGGugaaugCGgUGGCAaccgCGCCGg -3' miRNA: 3'- -CGGC-GGCGCCua----GCgGCUGUg---GUGGC- -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 9561 | 0.66 | 0.592787 |
Target: 5'- uGCCGCC-CGGAggucuucuUCGCuCGACucuUCugCGg -3' miRNA: 3'- -CGGCGGcGCCU--------AGCG-GCUGu--GGugGC- -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 5256 | 0.66 | 0.592787 |
Target: 5'- cGCC-CCGCauuGGuGUCGCCGuCGCCcaGCCa -3' miRNA: 3'- -CGGcGGCG---CC-UAGCGGCuGUGG--UGGc -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 66189 | 0.66 | 0.602671 |
Target: 5'- -aCGcCCGUGGGcUUGaCCGGCACCugCu -3' miRNA: 3'- cgGC-GGCGCCU-AGC-GGCUGUGGugGc -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 27909 | 0.66 | 0.609603 |
Target: 5'- gGUgGCCGUGGuuccgggcgaacccGUCGCCGugGuCCugACCGu -3' miRNA: 3'- -CGgCGGCGCC--------------UAGCGGCugU-GG--UGGC- -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 16621 | 0.66 | 0.611585 |
Target: 5'- cCCGCCGCGuuacaacuccacaGAuUUGCCGGgGCCAaauCCGa -3' miRNA: 3'- cGGCGGCGC-------------CU-AGCGGCUgUGGU---GGC- -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 29501 | 0.66 | 0.612576 |
Target: 5'- uCCGUCGCuccccGGGUCuGCCGACAaaacggUACCGa -3' miRNA: 3'- cGGCGGCG-----CCUAG-CGGCUGUg-----GUGGC- -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 27436 | 0.66 | 0.612576 |
Target: 5'- cGUCGUCGCGauuGAauUCGUCGAuCGCCAUCu -3' miRNA: 3'- -CGGCGGCGC---CU--AGCGGCU-GUGGUGGc -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 98341 | 0.66 | 0.622494 |
Target: 5'- aGCUcCCGCcaGUCGUCGACGCC-CCa -3' miRNA: 3'- -CGGcGGCGccUAGCGGCUGUGGuGGc -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 83356 | 0.66 | 0.622494 |
Target: 5'- gGCUGCUGCuccUCGUCGAUAuCCACCc -3' miRNA: 3'- -CGGCGGCGccuAGCGGCUGU-GGUGGc -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 27698 | 0.66 | 0.622494 |
Target: 5'- uCCGCCGCGGAggCGggauacgagaUCGACgaagugaguugGCCAUCGa -3' miRNA: 3'- cGGCGGCGCCUa-GC----------GGCUG-----------UGGUGGC- -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 25316 | 0.66 | 0.622494 |
Target: 5'- gGCUGCCGCGGuccuccAUCgGgCGAC-CCuCCGg -3' miRNA: 3'- -CGGCGGCGCC------UAG-CgGCUGuGGuGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home