Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 63885 | 0.67 | 0.582929 |
Target: 5'- gGCCGaCCGCGGugaaugCGgUGGCAaccgCGCCGg -3' miRNA: 3'- -CGGC-GGCGCCua----GCgGCUGUg---GUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 90835 | 0.67 | 0.582929 |
Target: 5'- cGUCGCUccacaccuuuuuGCGGGcgCGCUGcUGCCACCGg -3' miRNA: 3'- -CGGCGG------------CGCCUa-GCGGCuGUGGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 96540 | 0.67 | 0.582929 |
Target: 5'- aCCGCCccacuucagucgGCGGGggccaGCCGACGCaauCCGa -3' miRNA: 3'- cGGCGG------------CGCCUag---CGGCUGUGgu-GGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 93485 | 0.67 | 0.582929 |
Target: 5'- cCCGCCGCGGccgggcguGagGUCG-CACCACgGg -3' miRNA: 3'- cGGCGGCGCC--------UagCGGCuGUGGUGgC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 29717 | 0.67 | 0.581945 |
Target: 5'- cGCCaGCaGCGGGUCGuugcCCGGCuggggaucacccgGCCGCCa -3' miRNA: 3'- -CGG-CGgCGCCUAGC----GGCUG-------------UGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 58807 | 0.67 | 0.573106 |
Target: 5'- cGgCGCCGgGGccAUCGCC---ACCACCGc -3' miRNA: 3'- -CgGCGGCgCC--UAGCGGcugUGGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 14153 | 0.67 | 0.572125 |
Target: 5'- cGCCGUagCGCGGcUCGgCGAUgauguagACCGCCc -3' miRNA: 3'- -CGGCG--GCGCCuAGCgGCUG-------UGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 89694 | 0.67 | 0.571145 |
Target: 5'- uCCGCCGCGGcAgccuuggccuucuccUCGCCGACaaacgacaaaagggaGCC-CCa -3' miRNA: 3'- cGGCGGCGCC-U---------------AGCGGCUG---------------UGGuGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 83153 | 0.67 | 0.56723 |
Target: 5'- uGuuG-CGCGGGUgaugcacccacuucuUGCCGGCGCgCACCGc -3' miRNA: 3'- -CggCgGCGCCUA---------------GCGGCUGUG-GUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 26243 | 0.67 | 0.563321 |
Target: 5'- cCCGCgGCGGuuugaccCGCCucGAgGCCGCCa -3' miRNA: 3'- cGGCGgCGCCua-----GCGG--CUgUGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 7893 | 0.67 | 0.553581 |
Target: 5'- uCCGCU-CGGGuUCGCCGAgucgcggaACCACCGc -3' miRNA: 3'- cGGCGGcGCCU-AGCGGCUg-------UGGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 100848 | 0.67 | 0.553581 |
Target: 5'- uGCCGcCCGaCGGcaAUCGgaCGGCACCcgacACCGg -3' miRNA: 3'- -CGGC-GGC-GCC--UAGCg-GCUGUGG----UGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 17274 | 0.67 | 0.553581 |
Target: 5'- -gCGCaGCGGugauucguagucGUCGCCGACAUCgACCa -3' miRNA: 3'- cgGCGgCGCC------------UAGCGGCUGUGG-UGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 26115 | 0.67 | 0.547762 |
Target: 5'- aCCGcCCGCGGcgcccaaccCGCCGAacaggccggguagacCACCGCCa -3' miRNA: 3'- cGGC-GGCGCCua-------GCGGCU---------------GUGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 110858 | 0.67 | 0.543893 |
Target: 5'- aGCCGCCgGCGG-UCGaacauacuuUCGAC-CCGCCc -3' miRNA: 3'- -CGGCGG-CGCCuAGC---------GGCUGuGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 48748 | 0.67 | 0.53426 |
Target: 5'- uCCGCCGCc-AUCGCCGAgaaGCUGCUGg -3' miRNA: 3'- cGGCGGCGccUAGCGGCUg--UGGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 11570 | 0.67 | 0.53426 |
Target: 5'- uCUGCCGCuGGAUCGCuugccCGAaguugucCCACCGa -3' miRNA: 3'- cGGCGGCG-CCUAGCG-----GCUgu-----GGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 102353 | 0.67 | 0.53426 |
Target: 5'- gGCCGgucuaCUGCGaGggCGaCGACACCGCCa -3' miRNA: 3'- -CGGC-----GGCGC-CuaGCgGCUGUGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 23005 | 0.67 | 0.53426 |
Target: 5'- gGCCGUgacaaCGGcuuccAUCGCCGAUGCCAUCGu -3' miRNA: 3'- -CGGCGgc---GCC-----UAGCGGCUGUGGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 55662 | 0.67 | 0.53426 |
Target: 5'- gGCgCGCCacugaGGG-CGCUGACACCACUu -3' miRNA: 3'- -CG-GCGGcg---CCUaGCGGCUGUGGUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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