miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20454 3' -61.6 NC_004688.1 + 36914 0.67 0.5333
Target:  5'- aCCGUcuccaggCGCGGA-CGCCGACaggcuugccgaACCACUGu -3'
miRNA:   3'- cGGCG-------GCGCCUaGCGGCUG-----------UGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 28278 0.68 0.527553
Target:  5'- cGUCGCCGCauuccaugccgaaGCCGACGCCGCgGu -3'
miRNA:   3'- -CGGCGGCGccuag--------CGGCUGUGGUGgC- -5'
20454 3' -61.6 NC_004688.1 + 7377 0.68 0.515183
Target:  5'- gGCCcCCGgGcGAUCGCCGuGCAUgGCCc -3'
miRNA:   3'- -CGGcGGCgC-CUAGCGGC-UGUGgUGGc -5'
20454 3' -61.6 NC_004688.1 + 25068 0.68 0.515183
Target:  5'- uCCGCCGgGGAcUGCCcuggaGCCGCCa -3'
miRNA:   3'- cGGCGGCgCCUaGCGGcug--UGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 61945 0.68 0.515183
Target:  5'- uGCCG-CGCGGGUCGUCcauGGCcuuGCCGCgGa -3'
miRNA:   3'- -CGGCgGCGCCUAGCGG---CUG---UGGUGgC- -5'
20454 3' -61.6 NC_004688.1 + 81226 0.68 0.515183
Target:  5'- uGCCGCCGaaGAUuuucUGCC--CACCGCCGu -3'
miRNA:   3'- -CGGCGGCgcCUA----GCGGcuGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 30403 0.68 0.509513
Target:  5'- aCCGuuGCGGAuaauggUCGCCagGGCGCCcgggaacaggucgcgGCCGa -3'
miRNA:   3'- cGGCggCGCCU------AGCGG--CUGUGG---------------UGGC- -5'
20454 3' -61.6 NC_004688.1 + 44331 0.68 0.505748
Target:  5'- gGCCGCaGCGuagaGGUCGCCGGCGuuGgCGa -3'
miRNA:   3'- -CGGCGgCGC----CUAGCGGCUGUggUgGC- -5'
20454 3' -61.6 NC_004688.1 + 61819 0.68 0.477907
Target:  5'- aGuuGCCGCGGGgcUCGUCGGaGCUGCgGg -3'
miRNA:   3'- -CggCGGCGCCU--AGCGGCUgUGGUGgC- -5'
20454 3' -61.6 NC_004688.1 + 25432 0.68 0.468795
Target:  5'- uCCGCCGaacg-CGCCGGgGCCGCUGa -3'
miRNA:   3'- cGGCGGCgccuaGCGGCUgUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 33926 0.69 0.459773
Target:  5'- aGCCGCCaccaGGAgCGCCauUGCCGCCGg -3'
miRNA:   3'- -CGGCGGcg--CCUaGCGGcuGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 44252 0.69 0.459773
Target:  5'- gGCCGCaagcaGuCGGGgcCGgCGAUGCCGCCGg -3'
miRNA:   3'- -CGGCGg----C-GCCUa-GCgGCUGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 21048 0.69 0.459773
Target:  5'- cGCCGaaaCGCGGAUCGugaCCGugGCaguGCCc -3'
miRNA:   3'- -CGGCg--GCGCCUAGC---GGCugUGg--UGGc -5'
20454 3' -61.6 NC_004688.1 + 51686 0.69 0.450844
Target:  5'- -aUGaUCGCGGuucagCGCCGACACCGgCGg -3'
miRNA:   3'- cgGC-GGCGCCua---GCGGCUGUGGUgGC- -5'
20454 3' -61.6 NC_004688.1 + 70788 0.69 0.450844
Target:  5'- cCCGUCGac-AUUGCUGACACCAUCGg -3'
miRNA:   3'- cGGCGGCgccUAGCGGCUGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 7845 0.69 0.442011
Target:  5'- gGCCGCCagccccagGCcGAUgGCCGAaGCCGCCu -3'
miRNA:   3'- -CGGCGG--------CGcCUAgCGGCUgUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 65701 0.69 0.442011
Target:  5'- -aCGCCG-GGGUCGcCCGGCGCCuagcuugcgGCCu -3'
miRNA:   3'- cgGCGGCgCCUAGC-GGCUGUGG---------UGGc -5'
20454 3' -61.6 NC_004688.1 + 51976 0.69 0.442011
Target:  5'- cGCCGCUGCccuucUCGCUGcCGCCGCUGc -3'
miRNA:   3'- -CGGCGGCGccu--AGCGGCuGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 33343 0.69 0.424643
Target:  5'- aUCGCCcgaGCGGGUCaCCGACGCCuuCGc -3'
miRNA:   3'- cGGCGG---CGCCUAGcGGCUGUGGugGC- -5'
20454 3' -61.6 NC_004688.1 + 16317 0.69 0.424643
Target:  5'- gGCCGa-GaaGGUgGCCGACGCCACCc -3'
miRNA:   3'- -CGGCggCgcCUAgCGGCUGUGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.