miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20454 3' -61.6 NC_004688.1 + 1117 0.69 0.416114
Target:  5'- uCCGuaGCGGAUUGCC-ACGCgCACCu -3'
miRNA:   3'- cGGCggCGCCUAGCGGcUGUG-GUGGc -5'
20454 3' -61.6 NC_004688.1 + 2656 0.66 0.63242
Target:  5'- aCCGCCgGCGGcAUCGuaGAcCACCAgauCCGc -3'
miRNA:   3'- cGGCGG-CGCC-UAGCggCU-GUGGU---GGC- -5'
20454 3' -61.6 NC_004688.1 + 4206 0.75 0.193437
Target:  5'- -gCGCCGCGGG-CGCCGAgGCCcUCGg -3'
miRNA:   3'- cgGCGGCGCCUaGCGGCUgUGGuGGC- -5'
20454 3' -61.6 NC_004688.1 + 5256 0.66 0.592787
Target:  5'- cGCC-CCGCauuGGuGUCGCCGuCGCCcaGCCa -3'
miRNA:   3'- -CGGcGGCG---CC-UAGCGGCuGUGG--UGGc -5'
20454 3' -61.6 NC_004688.1 + 6200 0.71 0.336883
Target:  5'- uCCaGCgCGCGGua-GCgGACGCCGCCGa -3'
miRNA:   3'- cGG-CG-GCGCCuagCGgCUGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 6470 0.7 0.406853
Target:  5'- aGUCGCCGCcacuugucgagugGGAUCuCCGACAUuucagCGCCGa -3'
miRNA:   3'- -CGGCGGCG-------------CCUAGcGGCUGUG-----GUGGC- -5'
20454 3' -61.6 NC_004688.1 + 7377 0.68 0.515183
Target:  5'- gGCCcCCGgGcGAUCGCCGuGCAUgGCCc -3'
miRNA:   3'- -CGGcGGCgC-CUAGCGGC-UGUGgUGGc -5'
20454 3' -61.6 NC_004688.1 + 7845 0.69 0.442011
Target:  5'- gGCCGCCagccccagGCcGAUgGCCGAaGCCGCCu -3'
miRNA:   3'- -CGGCGG--------CGcCUAgCGGCUgUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 7893 0.67 0.553581
Target:  5'- uCCGCU-CGGGuUCGCCGAgucgcggaACCACCGc -3'
miRNA:   3'- cGGCGGcGCCU-AGCGGCUg-------UGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 9561 0.66 0.592787
Target:  5'- uGCCGCC-CGGAggucuucuUCGCuCGACucuUCugCGg -3'
miRNA:   3'- -CGGCGGcGCCU--------AGCG-GCUGu--GGugGC- -5'
20454 3' -61.6 NC_004688.1 + 10076 0.71 0.351817
Target:  5'- uGgCGCCGUGGcgAUCGCCuGACGCUcgGCCu -3'
miRNA:   3'- -CgGCGGCGCC--UAGCGG-CUGUGG--UGGc -5'
20454 3' -61.6 NC_004688.1 + 11570 0.67 0.53426
Target:  5'- uCUGCCGCuGGAUCGCuugccCGAaguugucCCACCGa -3'
miRNA:   3'- cGGCGGCG-CCUAGCG-----GCUgu-----GGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 14153 0.67 0.572125
Target:  5'- cGCCGUagCGCGGcUCGgCGAUgauguagACCGCCc -3'
miRNA:   3'- -CGGCG--GCGCCuAGCgGCUG-------UGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 16317 0.69 0.424643
Target:  5'- gGCCGa-GaaGGUgGCCGACGCCACCc -3'
miRNA:   3'- -CGGCggCgcCUAgCGGCUGUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 16621 0.66 0.611585
Target:  5'- cCCGCCGCGuuacaacuccacaGAuUUGCCGGgGCCAaauCCGa -3'
miRNA:   3'- cGGCGGCGC-------------CU-AGCGGCUgUGGU---GGC- -5'
20454 3' -61.6 NC_004688.1 + 17274 0.67 0.553581
Target:  5'- -gCGCaGCGGugauucguagucGUCGCCGACAUCgACCa -3'
miRNA:   3'- cgGCGgCGCC------------UAGCGGCUGUGG-UGGc -5'
20454 3' -61.6 NC_004688.1 + 21048 0.69 0.459773
Target:  5'- cGCCGaaaCGCGGAUCGugaCCGugGCaguGCCc -3'
miRNA:   3'- -CGGCg--GCGCCUAGC---GGCugUGg--UGGc -5'
20454 3' -61.6 NC_004688.1 + 22880 0.76 0.1755
Target:  5'- cGCCGCCGCGG--CGCCuACcccuACCGCCGc -3'
miRNA:   3'- -CGGCGGCGCCuaGCGGcUG----UGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 23005 0.67 0.53426
Target:  5'- gGCCGUgacaaCGGcuuccAUCGCCGAUGCCAUCGu -3'
miRNA:   3'- -CGGCGgc---GCC-----UAGCGGCUGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 24857 0.7 0.375086
Target:  5'- aGCCGUgGCGaGGUUGCCGACGagucgaACCa -3'
miRNA:   3'- -CGGCGgCGC-CUAGCGGCUGUgg----UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.