miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20454 3' -61.6 NC_004688.1 + 25068 0.68 0.515183
Target:  5'- uCCGCCGgGGAcUGCCcuggaGCCGCCa -3'
miRNA:   3'- cGGCGGCgCCUaGCGGcug--UGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 25316 0.66 0.622494
Target:  5'- gGCUGCCGCGGuccuccAUCgGgCGAC-CCuCCGg -3'
miRNA:   3'- -CGGCGGCGCC------UAG-CgGCUGuGGuGGC- -5'
20454 3' -61.6 NC_004688.1 + 25432 0.68 0.468795
Target:  5'- uCCGCCGaacg-CGCCGGgGCCGCUGa -3'
miRNA:   3'- cGGCGGCgccuaGCGGCUgUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 25567 0.71 0.351817
Target:  5'- gGCCGCCGCauucgcgauGGGggcguucaucUUGCCGAUcugcccaggACCGCCGg -3'
miRNA:   3'- -CGGCGGCG---------CCU----------AGCGGCUG---------UGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 25741 0.7 0.40769
Target:  5'- cCCGCCG-GGGcCGCCuugGGgGCCGCCGg -3'
miRNA:   3'- cGGCGGCgCCUaGCGG---CUgUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 26115 0.67 0.547762
Target:  5'- aCCGcCCGCGGcgcccaaccCGCCGAacaggccggguagacCACCGCCa -3'
miRNA:   3'- cGGC-GGCGCCua-------GCGGCU---------------GUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 26243 0.67 0.563321
Target:  5'- cCCGCgGCGGuuugaccCGCCucGAgGCCGCCa -3'
miRNA:   3'- cGGCGgCGCCua-----GCGG--CUgUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 26400 0.75 0.184276
Target:  5'- uGCCGCCGCcGAggcCGCCGGaGCUGCCGg -3'
miRNA:   3'- -CGGCGGCGcCUa--GCGGCUgUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 27319 0.66 0.631427
Target:  5'- uGCCGUCGCGGGUguauccgCGCUGAaGCUugUc -3'
miRNA:   3'- -CGGCGGCGCCUA-------GCGGCUgUGGugGc -5'
20454 3' -61.6 NC_004688.1 + 27436 0.66 0.612576
Target:  5'- cGUCGUCGCGauuGAauUCGUCGAuCGCCAUCu -3'
miRNA:   3'- -CGGCGGCGC---CU--AGCGGCU-GUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 27517 0.66 0.641353
Target:  5'- aGuuGaCCGCGGAuucggucUCGCacACACCAUCGc -3'
miRNA:   3'- -CggC-GGCGCCU-------AGCGgcUGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 27698 0.66 0.622494
Target:  5'- uCCGCCGCGGAggCGggauacgagaUCGACgaagugaguugGCCAUCGa -3'
miRNA:   3'- cGGCGGCGCCUa-GC----------GGCUG-----------UGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 27909 0.66 0.609603
Target:  5'- gGUgGCCGUGGuuccgggcgaacccGUCGCCGugGuCCugACCGu -3'
miRNA:   3'- -CGgCGGCGCC--------------UAGCGGCugU-GG--UGGC- -5'
20454 3' -61.6 NC_004688.1 + 28278 0.68 0.527553
Target:  5'- cGUCGCCGCauuccaugccgaaGCCGACGCCGCgGu -3'
miRNA:   3'- -CGGCGGCGccuag--------CGGCUGUGGUGgC- -5'
20454 3' -61.6 NC_004688.1 + 29501 0.66 0.612576
Target:  5'- uCCGUCGCuccccGGGUCuGCCGACAaaacggUACCGa -3'
miRNA:   3'- cGGCGGCG-----CCUAG-CGGCUGUg-----GUGGC- -5'
20454 3' -61.6 NC_004688.1 + 29717 0.67 0.581945
Target:  5'- cGCCaGCaGCGGGUCGuugcCCGGCuggggaucacccgGCCGCCa -3'
miRNA:   3'- -CGG-CGgCGCCUAGC----GGCUG-------------UGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 30403 0.68 0.509513
Target:  5'- aCCGuuGCGGAuaauggUCGCCagGGCGCCcgggaacaggucgcgGCCGa -3'
miRNA:   3'- cGGCggCGCCU------AGCGG--CUGUGG---------------UGGC- -5'
20454 3' -61.6 NC_004688.1 + 30807 0.66 0.631427
Target:  5'- uGCCaGCCGagaagaaCGGcagcUCGCCGAaGCCGCCc -3'
miRNA:   3'- -CGG-CGGC-------GCCu---AGCGGCUgUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 30914 0.79 0.101101
Target:  5'- cCCGCC-CGGAUCGaCCGGgguCACCACCGg -3'
miRNA:   3'- cGGCGGcGCCUAGC-GGCU---GUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 32577 1.1 0.000686
Target:  5'- cGCCGCCGCGGAUCGCCGACACCACCGu -3'
miRNA:   3'- -CGGCGGCGCCUAGCGGCUGUGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.