miRNA display CGI


Results 61 - 80 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20454 3' -61.6 NC_004688.1 + 60812 0.75 0.207925
Target:  5'- gGCCGCgGCGG-UCGCCaaugguccaGGCcCCGCCGg -3'
miRNA:   3'- -CGGCGgCGCCuAGCGG---------CUGuGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 61168 0.7 0.375086
Target:  5'- gGgUGUCGUGGucgCGCCGGC-CCACCa -3'
miRNA:   3'- -CgGCGGCGCCua-GCGGCUGuGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 61819 0.68 0.477907
Target:  5'- aGuuGCCGCGGGgcUCGUCGGaGCUGCgGg -3'
miRNA:   3'- -CggCGGCGCCU--AGCGGCUgUGGUGgC- -5'
20454 3' -61.6 NC_004688.1 + 61945 0.68 0.515183
Target:  5'- uGCCG-CGCGGGUCGUCcauGGCcuuGCCGCgGa -3'
miRNA:   3'- -CGGCgGCGCCUAGCGG---CUG---UGGUGgC- -5'
20454 3' -61.6 NC_004688.1 + 63885 0.67 0.582929
Target:  5'- gGCCGaCCGCGGugaaugCGgUGGCAaccgCGCCGg -3'
miRNA:   3'- -CGGC-GGCGCCua----GCgGCUGUg---GUGGC- -5'
20454 3' -61.6 NC_004688.1 + 65701 0.69 0.442011
Target:  5'- -aCGCCG-GGGUCGcCCGGCGCCuagcuugcgGCCu -3'
miRNA:   3'- cgGCGGCgCCUAGC-GGCUGUGG---------UGGc -5'
20454 3' -61.6 NC_004688.1 + 66189 0.66 0.602671
Target:  5'- -aCGcCCGUGGGcUUGaCCGGCACCugCu -3'
miRNA:   3'- cgGC-GGCGCCU-AGC-GGCUGUGGugGc -5'
20454 3' -61.6 NC_004688.1 + 70788 0.69 0.450844
Target:  5'- cCCGUCGac-AUUGCUGACACCAUCGg -3'
miRNA:   3'- cGGCGGCgccUAGCGGCUGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 73533 0.66 0.642345
Target:  5'- gGCCaGCCGagcuUUGCCGcACGCCugCGa -3'
miRNA:   3'- -CGG-CGGCgccuAGCGGC-UGUGGugGC- -5'
20454 3' -61.6 NC_004688.1 + 75580 0.73 0.245395
Target:  5'- gGCCGCCGCGGAcuccUCcgGCUGACccgaGCCAUCc -3'
miRNA:   3'- -CGGCGGCGCCU----AG--CGGCUG----UGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 78930 0.7 0.391166
Target:  5'- aGCUGCCGCGGAcgGUCGGCugCAa-- -3'
miRNA:   3'- -CGGCGGCGCCUagCGGCUGugGUggc -5'
20454 3' -61.6 NC_004688.1 + 79475 0.71 0.329591
Target:  5'- aUCGCCGCGGucUCgGCUGAUagGCCACCc -3'
miRNA:   3'- cGGCGGCGCCu-AG-CGGCUG--UGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 81226 0.68 0.515183
Target:  5'- uGCCGCCGaaGAUuuucUGCC--CACCGCCGu -3'
miRNA:   3'- -CGGCGGCgcCUA----GCGGcuGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 83153 0.67 0.56723
Target:  5'- uGuuG-CGCGGGUgaugcacccacuucuUGCCGGCGCgCACCGc -3'
miRNA:   3'- -CggCgGCGCCUA---------------GCGGCUGUG-GUGGC- -5'
20454 3' -61.6 NC_004688.1 + 83356 0.66 0.622494
Target:  5'- gGCUGCUGCuccUCGUCGAUAuCCACCc -3'
miRNA:   3'- -CGGCGGCGccuAGCGGCUGU-GGUGGc -5'
20454 3' -61.6 NC_004688.1 + 86812 0.71 0.359459
Target:  5'- aGCCGUCaccCGGAUCGUcccgaaCGGgACCGCCGg -3'
miRNA:   3'- -CGGCGGc--GCCUAGCG------GCUgUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 89694 0.67 0.571145
Target:  5'- uCCGCCGCGGcAgccuuggccuucuccUCGCCGACaaacgacaaaagggaGCC-CCa -3'
miRNA:   3'- cGGCGGCGCC-U---------------AGCGGCUG---------------UGGuGGc -5'
20454 3' -61.6 NC_004688.1 + 90199 0.72 0.288299
Target:  5'- aGuuGCCGCGGAauUCGCUGucucGCACUACgGc -3'
miRNA:   3'- -CggCGGCGCCU--AGCGGC----UGUGGUGgC- -5'
20454 3' -61.6 NC_004688.1 + 90835 0.67 0.582929
Target:  5'- cGUCGCUccacaccuuuuuGCGGGcgCGCUGcUGCCACCGg -3'
miRNA:   3'- -CGGCGG------------CGCCUa-GCGGCuGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 93485 0.67 0.582929
Target:  5'- cCCGCCGCGGccgggcguGagGUCG-CACCACgGg -3'
miRNA:   3'- cGGCGGCGCC--------UagCGGCuGUGGUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.