miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20454 3' -61.6 NC_004688.1 + 43881 0.66 0.639368
Target:  5'- aGCuCGCgCGCGaGAUcCGCCccgaagccgggaccGGCACCGuCCGg -3'
miRNA:   3'- -CG-GCG-GCGC-CUA-GCGG--------------CUGUGGU-GGC- -5'
20454 3' -61.6 NC_004688.1 + 41615 0.7 0.40769
Target:  5'- cGCCGCCGCccggaccgugguGGAaCGCCaGuuuCGCCGCUGc -3'
miRNA:   3'- -CGGCGGCG------------CCUaGCGG-Cu--GUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 41372 0.77 0.137
Target:  5'- cGCCGCCGUaaacguaaGGAUUGCCGAC-CCGCg- -3'
miRNA:   3'- -CGGCGGCG--------CCUAGCGGCUGuGGUGgc -5'
20454 3' -61.6 NC_004688.1 + 38676 0.73 0.271709
Target:  5'- cGCCGCCGCGGcgguagguAUCaucgaaacucugguaGCCcGCACCGCCc -3'
miRNA:   3'- -CGGCGGCGCC--------UAG---------------CGGcUGUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 36914 0.67 0.5333
Target:  5'- aCCGUcuccaggCGCGGA-CGCCGACaggcuugccgaACCACUGu -3'
miRNA:   3'- cGGCG-------GCGCCUaGCGGCUG-----------UGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 33926 0.69 0.459773
Target:  5'- aGCCGCCaccaGGAgCGCCauUGCCGCCGg -3'
miRNA:   3'- -CGGCGGcg--CCUaGCGGcuGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 33869 0.73 0.244822
Target:  5'- cGCCGUUaccggcaccaccaGCGGGcgCGCCGugGCCGCCc -3'
miRNA:   3'- -CGGCGG-------------CGCCUa-GCGGCugUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 33656 0.72 0.315358
Target:  5'- cGCCgGCCGCgccgucaccaGGAcCGCCcACGCCGCCa -3'
miRNA:   3'- -CGG-CGGCG----------CCUaGCGGcUGUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 33343 0.69 0.424643
Target:  5'- aUCGCCcgaGCGGGUCaCCGACGCCuuCGc -3'
miRNA:   3'- cGGCGG---CGCCUAGcGGCUGUGGugGC- -5'
20454 3' -61.6 NC_004688.1 + 32577 1.1 0.000686
Target:  5'- cGCCGCCGCGGAUCGCCGACACCACCGu -3'
miRNA:   3'- -CGGCGGCGCCUAGCGGCUGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 30914 0.79 0.101101
Target:  5'- cCCGCC-CGGAUCGaCCGGgguCACCACCGg -3'
miRNA:   3'- cGGCGGcGCCUAGC-GGCU---GUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 30807 0.66 0.631427
Target:  5'- uGCCaGCCGagaagaaCGGcagcUCGCCGAaGCCGCCc -3'
miRNA:   3'- -CGG-CGGC-------GCCu---AGCGGCUgUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 30403 0.68 0.509513
Target:  5'- aCCGuuGCGGAuaauggUCGCCagGGCGCCcgggaacaggucgcgGCCGa -3'
miRNA:   3'- cGGCggCGCCU------AGCGG--CUGUGG---------------UGGC- -5'
20454 3' -61.6 NC_004688.1 + 29717 0.67 0.581945
Target:  5'- cGCCaGCaGCGGGUCGuugcCCGGCuggggaucacccgGCCGCCa -3'
miRNA:   3'- -CGG-CGgCGCCUAGC----GGCUG-------------UGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 29501 0.66 0.612576
Target:  5'- uCCGUCGCuccccGGGUCuGCCGACAaaacggUACCGa -3'
miRNA:   3'- cGGCGGCG-----CCUAG-CGGCUGUg-----GUGGC- -5'
20454 3' -61.6 NC_004688.1 + 28278 0.68 0.527553
Target:  5'- cGUCGCCGCauuccaugccgaaGCCGACGCCGCgGu -3'
miRNA:   3'- -CGGCGGCGccuag--------CGGCUGUGGUGgC- -5'
20454 3' -61.6 NC_004688.1 + 27909 0.66 0.609603
Target:  5'- gGUgGCCGUGGuuccgggcgaacccGUCGCCGugGuCCugACCGu -3'
miRNA:   3'- -CGgCGGCGCC--------------UAGCGGCugU-GG--UGGC- -5'
20454 3' -61.6 NC_004688.1 + 27698 0.66 0.622494
Target:  5'- uCCGCCGCGGAggCGggauacgagaUCGACgaagugaguugGCCAUCGa -3'
miRNA:   3'- cGGCGGCGCCUa-GC----------GGCUG-----------UGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 27517 0.66 0.641353
Target:  5'- aGuuGaCCGCGGAuucggucUCGCacACACCAUCGc -3'
miRNA:   3'- -CggC-GGCGCCU-------AGCGgcUGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 27436 0.66 0.612576
Target:  5'- cGUCGUCGCGauuGAauUCGUCGAuCGCCAUCu -3'
miRNA:   3'- -CGGCGGCGC---CU--AGCGGCU-GUGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.