miRNA display CGI


Results 61 - 80 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20454 3' -61.6 NC_004688.1 + 27319 0.66 0.631427
Target:  5'- uGCCGUCGCGGGUguauccgCGCUGAaGCUugUc -3'
miRNA:   3'- -CGGCGGCGCCUA-------GCGGCUgUGGugGc -5'
20454 3' -61.6 NC_004688.1 + 26400 0.75 0.184276
Target:  5'- uGCCGCCGCcGAggcCGCCGGaGCUGCCGg -3'
miRNA:   3'- -CGGCGGCGcCUa--GCGGCUgUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 26243 0.67 0.563321
Target:  5'- cCCGCgGCGGuuugaccCGCCucGAgGCCGCCa -3'
miRNA:   3'- cGGCGgCGCCua-----GCGG--CUgUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 26115 0.67 0.547762
Target:  5'- aCCGcCCGCGGcgcccaaccCGCCGAacaggccggguagacCACCGCCa -3'
miRNA:   3'- cGGC-GGCGCCua-------GCGGCU---------------GUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 25741 0.7 0.40769
Target:  5'- cCCGCCG-GGGcCGCCuugGGgGCCGCCGg -3'
miRNA:   3'- cGGCGGCgCCUaGCGG---CUgUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 25567 0.71 0.351817
Target:  5'- gGCCGCCGCauucgcgauGGGggcguucaucUUGCCGAUcugcccaggACCGCCGg -3'
miRNA:   3'- -CGGCGGCG---------CCU----------AGCGGCUG---------UGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 25432 0.68 0.468795
Target:  5'- uCCGCCGaacg-CGCCGGgGCCGCUGa -3'
miRNA:   3'- cGGCGGCgccuaGCGGCUgUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 25316 0.66 0.622494
Target:  5'- gGCUGCCGCGGuccuccAUCgGgCGAC-CCuCCGg -3'
miRNA:   3'- -CGGCGGCGCC------UAG-CgGCUGuGGuGGC- -5'
20454 3' -61.6 NC_004688.1 + 25068 0.68 0.515183
Target:  5'- uCCGCCGgGGAcUGCCcuggaGCCGCCa -3'
miRNA:   3'- cGGCGGCgCCUaGCGGcug--UGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 24857 0.7 0.375086
Target:  5'- aGCCGUgGCGaGGUUGCCGACGagucgaACCa -3'
miRNA:   3'- -CGGCGgCGC-CUAGCGGCUGUgg----UGGc -5'
20454 3' -61.6 NC_004688.1 + 23005 0.67 0.53426
Target:  5'- gGCCGUgacaaCGGcuuccAUCGCCGAUGCCAUCGu -3'
miRNA:   3'- -CGGCGgc---GCC-----UAGCGGCUGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 22880 0.76 0.1755
Target:  5'- cGCCGCCGCGG--CGCCuACcccuACCGCCGc -3'
miRNA:   3'- -CGGCGGCGCCuaGCGGcUG----UGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 21048 0.69 0.459773
Target:  5'- cGCCGaaaCGCGGAUCGugaCCGugGCaguGCCc -3'
miRNA:   3'- -CGGCg--GCGCCUAGC---GGCugUGg--UGGc -5'
20454 3' -61.6 NC_004688.1 + 17274 0.67 0.553581
Target:  5'- -gCGCaGCGGugauucguagucGUCGCCGACAUCgACCa -3'
miRNA:   3'- cgGCGgCGCC------------UAGCGGCUGUGG-UGGc -5'
20454 3' -61.6 NC_004688.1 + 16621 0.66 0.611585
Target:  5'- cCCGCCGCGuuacaacuccacaGAuUUGCCGGgGCCAaauCCGa -3'
miRNA:   3'- cGGCGGCGC-------------CU-AGCGGCUgUGGU---GGC- -5'
20454 3' -61.6 NC_004688.1 + 16317 0.69 0.424643
Target:  5'- gGCCGa-GaaGGUgGCCGACGCCACCc -3'
miRNA:   3'- -CGGCggCgcCUAgCGGCUGUGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 14153 0.67 0.572125
Target:  5'- cGCCGUagCGCGGcUCGgCGAUgauguagACCGCCc -3'
miRNA:   3'- -CGGCG--GCGCCuAGCgGCUG-------UGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 11570 0.67 0.53426
Target:  5'- uCUGCCGCuGGAUCGCuugccCGAaguugucCCACCGa -3'
miRNA:   3'- cGGCGGCG-CCUAGCG-----GCUgu-----GGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 10076 0.71 0.351817
Target:  5'- uGgCGCCGUGGcgAUCGCCuGACGCUcgGCCu -3'
miRNA:   3'- -CgGCGGCGCC--UAGCGG-CUGUGG--UGGc -5'
20454 3' -61.6 NC_004688.1 + 9561 0.66 0.592787
Target:  5'- uGCCGCC-CGGAggucuucuUCGCuCGACucuUCugCGg -3'
miRNA:   3'- -CGGCGGcGCCU--------AGCG-GCUGu--GGugGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.