Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 61168 | 0.7 | 0.375086 |
Target: 5'- gGgUGUCGUGGucgCGCCGGC-CCACCa -3' miRNA: 3'- -CgGCGGCGCCua-GCGGCUGuGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 46754 | 0.7 | 0.367215 |
Target: 5'- aUCGCCcgGCGGGcccugaUCGCCGGCgcgaugGCCACCa -3' miRNA: 3'- cGGCGG--CGCCU------AGCGGCUG------UGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 75580 | 0.73 | 0.245395 |
Target: 5'- gGCCGCCGCGGAcuccUCcgGCUGACccgaGCCAUCc -3' miRNA: 3'- -CGGCGGCGCCU----AG--CGGCUG----UGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 33869 | 0.73 | 0.244822 |
Target: 5'- cGCCGUUaccggcaccaccaGCGGGcgCGCCGugGCCGCCc -3' miRNA: 3'- -CGGCGG-------------CGCCUa-GCGGCugUGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 60812 | 0.75 | 0.207925 |
Target: 5'- gGCCGCgGCGG-UCGCCaaugguccaGGCcCCGCCGg -3' miRNA: 3'- -CGGCGgCGCCuAGCGG---------CUGuGGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 4206 | 0.75 | 0.193437 |
Target: 5'- -gCGCCGCGGG-CGCCGAgGCCcUCGg -3' miRNA: 3'- cgGCGGCGCCUaGCGGCUgUGGuGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 26400 | 0.75 | 0.184276 |
Target: 5'- uGCCGCCGCcGAggcCGCCGGaGCUGCCGg -3' miRNA: 3'- -CGGCGGCGcCUa--GCGGCUgUGGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 22880 | 0.76 | 0.1755 |
Target: 5'- cGCCGCCGCGG--CGCCuACcccuACCGCCGc -3' miRNA: 3'- -CGGCGGCGCCuaGCGGcUG----UGGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 41372 | 0.77 | 0.137 |
Target: 5'- cGCCGCCGUaaacguaaGGAUUGCCGAC-CCGCg- -3' miRNA: 3'- -CGGCGGCG--------CCUAGCGGCUGuGGUGgc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 30914 | 0.79 | 0.101101 |
Target: 5'- cCCGCC-CGGAUCGaCCGGgguCACCACCGg -3' miRNA: 3'- cGGCGGcGCCUAGC-GGCU---GUGGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 38676 | 0.73 | 0.271709 |
Target: 5'- cGCCGCCGCGGcgguagguAUCaucgaaacucugguaGCCcGCACCGCCc -3' miRNA: 3'- -CGGCGGCGCC--------UAG---------------CGGcUGUGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 90199 | 0.72 | 0.288299 |
Target: 5'- aGuuGCCGCGGAauUCGCUGucucGCACUACgGc -3' miRNA: 3'- -CggCGGCGCCU--AGCGGC----UGUGGUGgC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 86812 | 0.71 | 0.359459 |
Target: 5'- aGCCGUCaccCGGAUCGUcccgaaCGGgACCGCCGg -3' miRNA: 3'- -CGGCGGc--GCCUAGCG------GCUgUGGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 10076 | 0.71 | 0.351817 |
Target: 5'- uGgCGCCGUGGcgAUCGCCuGACGCUcgGCCu -3' miRNA: 3'- -CgGCGGCGCC--UAGCGG-CUGUGG--UGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 25567 | 0.71 | 0.351817 |
Target: 5'- gGCCGCCGCauucgcgauGGGggcguucaucUUGCCGAUcugcccaggACCGCCGg -3' miRNA: 3'- -CGGCGGCG---------CCU----------AGCGGCUG---------UGGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 6200 | 0.71 | 0.336883 |
Target: 5'- uCCaGCgCGCGGua-GCgGACGCCGCCGa -3' miRNA: 3'- cGG-CG-GCGCCuagCGgCUGUGGUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 79475 | 0.71 | 0.329591 |
Target: 5'- aUCGCCGCGGucUCgGCUGAUagGCCACCc -3' miRNA: 3'- cGGCGGCGCCu-AG-CGGCUG--UGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 33656 | 0.72 | 0.315358 |
Target: 5'- cGCCgGCCGCgccgucaccaGGAcCGCCcACGCCGCCa -3' miRNA: 3'- -CGG-CGGCG----------CCUaGCGGcUGUGGUGGc -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 102936 | 0.72 | 0.314659 |
Target: 5'- cGCCGCCGaGGAucggcuagagcuaUCGCgGGCGCgACUGg -3' miRNA: 3'- -CGGCGGCgCCU-------------AGCGgCUGUGgUGGC- -5' |
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20454 | 3' | -61.6 | NC_004688.1 | + | 46490 | 0.72 | 0.308418 |
Target: 5'- aUCGCCGCGGGcUCcCCgGugACCACCa -3' miRNA: 3'- cGGCGGCGCCU-AGcGG-CugUGGUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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