miRNA display CGI


Results 41 - 60 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20454 3' -61.6 NC_004688.1 + 4206 0.75 0.193437
Target:  5'- -gCGCCGCGGG-CGCCGAgGCCcUCGg -3'
miRNA:   3'- cgGCGGCGCCUaGCGGCUgUGGuGGC- -5'
20454 3' -61.6 NC_004688.1 + 26400 0.75 0.184276
Target:  5'- uGCCGCCGCcGAggcCGCCGGaGCUGCCGg -3'
miRNA:   3'- -CGGCGGCGcCUa--GCGGCUgUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 22880 0.76 0.1755
Target:  5'- cGCCGCCGCGG--CGCCuACcccuACCGCCGc -3'
miRNA:   3'- -CGGCGGCGCCuaGCGGcUG----UGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 41372 0.77 0.137
Target:  5'- cGCCGCCGUaaacguaaGGAUUGCCGAC-CCGCg- -3'
miRNA:   3'- -CGGCGGCG--------CCUAGCGGCUGuGGUGgc -5'
20454 3' -61.6 NC_004688.1 + 30914 0.79 0.101101
Target:  5'- cCCGCC-CGGAUCGaCCGGgguCACCACCGg -3'
miRNA:   3'- cGGCGGcGCCUAGC-GGCU---GUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 79475 0.71 0.329591
Target:  5'- aUCGCCGCGGucUCgGCUGAUagGCCACCc -3'
miRNA:   3'- cGGCGGCGCCu-AG-CGGCUG--UGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 6200 0.71 0.336883
Target:  5'- uCCaGCgCGCGGua-GCgGACGCCGCCGa -3'
miRNA:   3'- cGG-CG-GCGCCuagCGgCUGUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 1117 0.69 0.416114
Target:  5'- uCCGuaGCGGAUUGCC-ACGCgCACCu -3'
miRNA:   3'- cGGCggCGCCUAGCGGcUGUG-GUGGc -5'
20454 3' -61.6 NC_004688.1 + 25741 0.7 0.40769
Target:  5'- cCCGCCG-GGGcCGCCuugGGgGCCGCCGg -3'
miRNA:   3'- cGGCGGCgCCUaGCGG---CUgUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 41615 0.7 0.40769
Target:  5'- cGCCGCCGCccggaccgugguGGAaCGCCaGuuuCGCCGCUGc -3'
miRNA:   3'- -CGGCGGCG------------CCUaGCGG-Cu--GUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 99864 0.7 0.40769
Target:  5'- uGCCGCaucuGCuGGUgGCUGGCGCgACCGg -3'
miRNA:   3'- -CGGCGg---CGcCUAgCGGCUGUGgUGGC- -5'
20454 3' -61.6 NC_004688.1 + 6470 0.7 0.406853
Target:  5'- aGUCGCCGCcacuugucgagugGGAUCuCCGACAUuucagCGCCGa -3'
miRNA:   3'- -CGGCGGCG-------------CCUAGcGGCUGUG-----GUGGC- -5'
20454 3' -61.6 NC_004688.1 + 96610 0.7 0.402687
Target:  5'- cCCGCC-CGGAcucgaaccgagacgCGCCGAaauUACCGCCGg -3'
miRNA:   3'- cGGCGGcGCCUa-------------GCGGCU---GUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 78930 0.7 0.391166
Target:  5'- aGCUGCCGCGGAcgGUCGGCugCAa-- -3'
miRNA:   3'- -CGGCGGCGCCUagCGGCUGugGUggc -5'
20454 3' -61.6 NC_004688.1 + 24857 0.7 0.375086
Target:  5'- aGCCGUgGCGaGGUUGCCGACGagucgaACCa -3'
miRNA:   3'- -CGGCGgCGC-CUAGCGGCUGUgg----UGGc -5'
20454 3' -61.6 NC_004688.1 + 61168 0.7 0.375086
Target:  5'- gGgUGUCGUGGucgCGCCGGC-CCACCa -3'
miRNA:   3'- -CgGCGGCGCCua-GCGGCUGuGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 46754 0.7 0.367215
Target:  5'- aUCGCCcgGCGGGcccugaUCGCCGGCgcgaugGCCACCa -3'
miRNA:   3'- cGGCGG--CGCCU------AGCGGCUG------UGGUGGc -5'
20454 3' -61.6 NC_004688.1 + 86812 0.71 0.359459
Target:  5'- aGCCGUCaccCGGAUCGUcccgaaCGGgACCGCCGg -3'
miRNA:   3'- -CGGCGGc--GCCUAGCG------GCUgUGGUGGC- -5'
20454 3' -61.6 NC_004688.1 + 10076 0.71 0.351817
Target:  5'- uGgCGCCGUGGcgAUCGCCuGACGCUcgGCCu -3'
miRNA:   3'- -CgGCGGCGCC--UAGCGG-CUGUGG--UGGc -5'
20454 3' -61.6 NC_004688.1 + 25567 0.71 0.351817
Target:  5'- gGCCGCCGCauucgcgauGGGggcguucaucUUGCCGAUcugcccaggACCGCCGg -3'
miRNA:   3'- -CGGCGGCG---------CCU----------AGCGGCUG---------UGGUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.