Results 81 - 89 of 89 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 6470 | 0.7 | 0.406853 |
Target: 5'- aGUCGCCGCcacuugucgagugGGAUCuCCGACAUuucagCGCCGa -3' miRNA: 3'- -CGGCGGCG-------------CCUAGcGGCUGUG-----GUGGC- -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 99864 | 0.7 | 0.40769 |
Target: 5'- uGCCGCaucuGCuGGUgGCUGGCGCgACCGg -3' miRNA: 3'- -CGGCGg---CGcCUAgCGGCUGUGgUGGC- -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 41615 | 0.7 | 0.40769 |
Target: 5'- cGCCGCCGCccggaccgugguGGAaCGCCaGuuuCGCCGCUGc -3' miRNA: 3'- -CGGCGGCG------------CCUaGCGG-Cu--GUGGUGGC- -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 25741 | 0.7 | 0.40769 |
Target: 5'- cCCGCCG-GGGcCGCCuugGGgGCCGCCGg -3' miRNA: 3'- cGGCGGCgCCUaGCGG---CUgUGGUGGC- -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 1117 | 0.69 | 0.416114 |
Target: 5'- uCCGuaGCGGAUUGCC-ACGCgCACCu -3' miRNA: 3'- cGGCggCGCCUAGCGGcUGUG-GUGGc -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 33343 | 0.69 | 0.424643 |
Target: 5'- aUCGCCcgaGCGGGUCaCCGACGCCuuCGc -3' miRNA: 3'- cGGCGG---CGCCUAGcGGCUGUGGugGC- -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 16317 | 0.69 | 0.424643 |
Target: 5'- gGCCGa-GaaGGUgGCCGACGCCACCc -3' miRNA: 3'- -CGGCggCgcCUAgCGGCUGUGGUGGc -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 7845 | 0.69 | 0.442011 |
Target: 5'- gGCCGCCagccccagGCcGAUgGCCGAaGCCGCCu -3' miRNA: 3'- -CGGCGG--------CGcCUAgCGGCUgUGGUGGc -5' |
|||||||
20454 | 3' | -61.6 | NC_004688.1 | + | 81226 | 0.68 | 0.515183 |
Target: 5'- uGCCGCCGaaGAUuuucUGCC--CACCGCCGu -3' miRNA: 3'- -CGGCGGCgcCUA----GCGGcuGUGGUGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home