Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20456 | 5' | -57.9 | NC_004688.1 | + | 5514 | 0.67 | 0.704708 |
Target: 5'- aUCUGGUgGCCCguGACGCCGccGUCGGa -3' miRNA: 3'- cAGGUCAgCGGG--CUGCGGUu-CAGCUg -5' |
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20456 | 5' | -57.9 | NC_004688.1 | + | 6418 | 0.66 | 0.763769 |
Target: 5'- -gCCAGUCa-CCGAUGCCGAGgCGGu -3' miRNA: 3'- caGGUCAGcgGGCUGCGGUUCaGCUg -5' |
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20456 | 5' | -57.9 | NC_004688.1 | + | 11200 | 0.66 | 0.744455 |
Target: 5'- uUCCGGU-GCCCaGCGU--GGUCGGCa -3' miRNA: 3'- cAGGUCAgCGGGcUGCGguUCAGCUG- -5' |
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20456 | 5' | -57.9 | NC_004688.1 | + | 14416 | 0.66 | 0.754167 |
Target: 5'- --aCGGUCGCCgGACGCUuccacacucAGUcCGGCg -3' miRNA: 3'- cagGUCAGCGGgCUGCGGu--------UCA-GCUG- -5' |
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20456 | 5' | -57.9 | NC_004688.1 | + | 18261 | 0.67 | 0.714761 |
Target: 5'- gGUCCAcGagGCCCGACcaGCgCAuGUUGACa -3' miRNA: 3'- -CAGGU-CagCGGGCUG--CG-GUuCAGCUG- -5' |
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20456 | 5' | -57.9 | NC_004688.1 | + | 27780 | 0.66 | 0.78261 |
Target: 5'- cGUgUAGggccCGCCCGACuCCccGUCGACa -3' miRNA: 3'- -CAgGUCa---GCGGGCUGcGGuuCAGCUG- -5' |
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20456 | 5' | -57.9 | NC_004688.1 | + | 33058 | 1.08 | 0.001512 |
Target: 5'- cGUCCAGUCGCCCGACGCCAAGUCGACc -3' miRNA: 3'- -CAGGUCAGCGGGCUGCGGUUCAGCUG- -5' |
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20456 | 5' | -57.9 | NC_004688.1 | + | 33640 | 0.67 | 0.724743 |
Target: 5'- -aCCAGgacCGCCC-ACGCCGccagcgcccgGGUCGAg -3' miRNA: 3'- caGGUCa--GCGGGcUGCGGU----------UCAGCUg -5' |
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20456 | 5' | -57.9 | NC_004688.1 | + | 39203 | 0.72 | 0.427017 |
Target: 5'- cUCCAG-CGCCUGGguuacCGCCGguuuGGUCGGCg -3' miRNA: 3'- cAGGUCaGCGGGCU-----GCGGU----UCAGCUG- -5' |
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20456 | 5' | -57.9 | NC_004688.1 | + | 39883 | 0.71 | 0.49211 |
Target: 5'- gGUCCAGUcggCGCCUGcucCGCCGGGUCcgguGGCg -3' miRNA: 3'- -CAGGUCA---GCGGGCu--GCGGUUCAG----CUG- -5' |
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20456 | 5' | -57.9 | NC_004688.1 | + | 41177 | 0.66 | 0.754167 |
Target: 5'- aUCCAGguuguggaCGCCCGGCaGCUu-GUCGAg -3' miRNA: 3'- cAGGUCa-------GCGGGCUG-CGGuuCAGCUg -5' |
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20456 | 5' | -57.9 | NC_004688.1 | + | 41930 | 0.67 | 0.704708 |
Target: 5'- -cCCGGUUGCCCGGCcagaacggaucGCgGuAGUUGGCg -3' miRNA: 3'- caGGUCAGCGGGCUG-----------CGgU-UCAGCUG- -5' |
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20456 | 5' | -57.9 | NC_004688.1 | + | 56751 | 0.67 | 0.704708 |
Target: 5'- aGUCCAGgcauccUCGUCaaaGAUGCCGA-UCGACu -3' miRNA: 3'- -CAGGUC------AGCGGg--CUGCGGUUcAGCUG- -5' |
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20456 | 5' | -57.9 | NC_004688.1 | + | 63328 | 0.67 | 0.734644 |
Target: 5'- --aCGGgcgCGcCCCGGCGCCAcgcGUCGAg -3' miRNA: 3'- cagGUCa--GC-GGGCUGCGGUu--CAGCUg -5' |
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20456 | 5' | -57.9 | NC_004688.1 | + | 65699 | 0.74 | 0.328314 |
Target: 5'- -gCCggGGUCGCCCGGCGCCuAGcuugcggccUCGGCg -3' miRNA: 3'- caGG--UCAGCGGGCUGCGGuUC---------AGCUG- -5' |
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20456 | 5' | -57.9 | NC_004688.1 | + | 65893 | 0.68 | 0.661911 |
Target: 5'- cUCCGGUgggucuuuaaggGCCCcGCGCCAAGUCGcgGCg -3' miRNA: 3'- cAGGUCAg-----------CGGGcUGCGGUUCAGC--UG- -5' |
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20456 | 5' | -57.9 | NC_004688.1 | + | 78831 | 0.67 | 0.704708 |
Target: 5'- -aCCAGUCGgCCGGCaa-GGGUUGACu -3' miRNA: 3'- caGGUCAGCgGGCUGcggUUCAGCUG- -5' |
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20456 | 5' | -57.9 | NC_004688.1 | + | 81284 | 0.68 | 0.622801 |
Target: 5'- -cCCucGUCGuuguaCCCGGCGUCAGGUCGGg -3' miRNA: 3'- caGGu-CAGC-----GGGCUGCGGUUCAGCUg -5' |
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20456 | 5' | -57.9 | NC_004688.1 | + | 87251 | 0.66 | 0.763769 |
Target: 5'- cUCCAGgccccccCGCCC-ACGCCAGggcGUCGGa -3' miRNA: 3'- cAGGUCa------GCGGGcUGCGGUU---CAGCUg -5' |
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20456 | 5' | -57.9 | NC_004688.1 | + | 87639 | 0.7 | 0.521387 |
Target: 5'- -gUCGGUCgGCCCGcGCGCCAcccGUCGAUc -3' miRNA: 3'- caGGUCAG-CGGGC-UGCGGUu--CAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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