miRNA display CGI


Results 21 - 24 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20456 5' -57.9 NC_004688.1 + 39203 0.72 0.427017
Target:  5'- cUCCAG-CGCCUGGguuacCGCCGguuuGGUCGGCg -3'
miRNA:   3'- cAGGUCaGCGGGCU-----GCGGU----UCAGCUG- -5'
20456 5' -57.9 NC_004688.1 + 92108 0.72 0.427017
Target:  5'- cUCCAGUUGgCCGgauGCGgguCCGGGUCGACg -3'
miRNA:   3'- cAGGUCAGCgGGC---UGC---GGUUCAGCUG- -5'
20456 5' -57.9 NC_004688.1 + 65699 0.74 0.328314
Target:  5'- -gCCggGGUCGCCCGGCGCCuAGcuugcggccUCGGCg -3'
miRNA:   3'- caGG--UCAGCGGGCUGCGGuUC---------AGCUG- -5'
20456 5' -57.9 NC_004688.1 + 33058 1.08 0.001512
Target:  5'- cGUCCAGUCGCCCGACGCCAAGUCGACc -3'
miRNA:   3'- -CAGGUCAGCGGGCUGCGGUUCAGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.