miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20457 3' -52.8 NC_004688.1 + 91273 0.66 0.957953
Target:  5'- uCCGCGCACAacuUGAUGgucuuccagaacucCGUcGCCGCCa-- -3'
miRNA:   3'- -GGUGCGUGU---AUUAC--------------GCA-UGGCGGgug -5'
20457 3' -52.8 NC_004688.1 + 97345 0.66 0.955189
Target:  5'- aCCACGCugAacAAUGCGgUAUCGCaggacugacaggCCACc -3'
miRNA:   3'- -GGUGCGugUa-UUACGC-AUGGCG------------GGUG- -5'
20457 3' -52.8 NC_004688.1 + 16214 0.66 0.952724
Target:  5'- gCCGCGCucaACGauGUGCGUcgagcuggcggcgggGCCGUgCGCa -3'
miRNA:   3'- -GGUGCG---UGUauUACGCA---------------UGGCGgGUG- -5'
20457 3' -52.8 NC_004688.1 + 19711 0.66 0.951031
Target:  5'- gCGCGUAUcUGGUGgGggaAUCGCCCAUu -3'
miRNA:   3'- gGUGCGUGuAUUACgCa--UGGCGGGUG- -5'
20457 3' -52.8 NC_004688.1 + 72503 0.66 0.946622
Target:  5'- cUCugGCAUAgg--GCGcaaCGCCCACc -3'
miRNA:   3'- -GGugCGUGUauuaCGCaugGCGGGUG- -5'
20457 3' -52.8 NC_004688.1 + 35286 0.66 0.946622
Target:  5'- aCC-CGCACccaAAUGCGggUauaGCCCGCg -3'
miRNA:   3'- -GGuGCGUGua-UUACGCauGg--CGGGUG- -5'
20457 3' -52.8 NC_004688.1 + 94797 0.66 0.946622
Target:  5'- -aGCGC-CAcAAUGacaaacCGUAUCGCCCACc -3'
miRNA:   3'- ggUGCGuGUaUUAC------GCAUGGCGGGUG- -5'
20457 3' -52.8 NC_004688.1 + 45236 0.66 0.941959
Target:  5'- uCCAUGCGguUGAgcauuucgccuUGCGUcucuuGCCcgGCCCGCa -3'
miRNA:   3'- -GGUGCGUguAUU-----------ACGCA-----UGG--CGGGUG- -5'
20457 3' -52.8 NC_004688.1 + 35820 0.67 0.93704
Target:  5'- uCCGCGCGCAa---GCGcGCC-CCCAg -3'
miRNA:   3'- -GGUGCGUGUauuaCGCaUGGcGGGUg -5'
20457 3' -52.8 NC_004688.1 + 31104 0.67 0.933965
Target:  5'- cCCACGCGC----UGCGcggugggcacccacaUGCCGUCCGa -3'
miRNA:   3'- -GGUGCGUGuauuACGC---------------AUGGCGGGUg -5'
20457 3' -52.8 NC_004688.1 + 76922 0.67 0.931863
Target:  5'- uUCGCGUagACAUGcUGCagACCGcCCCACu -3'
miRNA:   3'- -GGUGCG--UGUAUuACGcaUGGC-GGGUG- -5'
20457 3' -52.8 NC_004688.1 + 55712 0.68 0.902091
Target:  5'- cCCACGCAgCGgcugGcgGCGUacucaaaccaguGCCGCUUGCa -3'
miRNA:   3'- -GGUGCGU-GUa---UuaCGCA------------UGGCGGGUG- -5'
20457 3' -52.8 NC_004688.1 + 89481 0.68 0.895368
Target:  5'- cCCAgGCGCAUGAauucgGuCGUACCGUCgAg -3'
miRNA:   3'- -GGUgCGUGUAUUa----C-GCAUGGCGGgUg -5'
20457 3' -52.8 NC_004688.1 + 31260 0.68 0.895368
Target:  5'- uCCACGCGCGUAu--CG-GCCGCgCCGg -3'
miRNA:   3'- -GGUGCGUGUAUuacGCaUGGCG-GGUg -5'
20457 3' -52.8 NC_004688.1 + 33651 0.68 0.885538
Target:  5'- gCCGCGC-CGUcaccaggACCGCCCACg -3'
miRNA:   3'- -GGUGCGuGUAuuacgcaUGGCGGGUG- -5'
20457 3' -52.8 NC_004688.1 + 106417 0.68 0.881178
Target:  5'- uCCGCGCGCGUAucgcuaGCGcGCCGgCUAg -3'
miRNA:   3'- -GGUGCGUGUAUua----CGCaUGGCgGGUg -5'
20457 3' -52.8 NC_004688.1 + 14147 0.68 0.881178
Target:  5'- -aGCGCggcucgGCgAUGAUGUagACCGCCCGCg -3'
miRNA:   3'- ggUGCG------UG-UAUUACGcaUGGCGGGUG- -5'
20457 3' -52.8 NC_004688.1 + 109535 0.68 0.87372
Target:  5'- gCCACgaugaGCGCAUAAUugaaGUAUCaGCCCACa -3'
miRNA:   3'- -GGUG-----CGUGUAUUAcg--CAUGG-CGGGUG- -5'
20457 3' -52.8 NC_004688.1 + 24269 0.69 0.858105
Target:  5'- gCCgAUGCcCGUGGUaGCGcUGCgGCCCGCg -3'
miRNA:   3'- -GG-UGCGuGUAUUA-CGC-AUGgCGGGUG- -5'
20457 3' -52.8 NC_004688.1 + 34432 0.69 0.849962
Target:  5'- -aACGgGCGaac--CGUGCCGCCCACg -3'
miRNA:   3'- ggUGCgUGUauuacGCAUGGCGGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.