miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2046 3' -49.1 NC_001347.2 + 210966 0.65 0.999826
Target:  5'- uUUgAGGGAUGagcacgaUGCCGUgcuugUCaUGCUGCCa -3'
miRNA:   3'- -AAgUCCUUAC-------AUGGCA-----AGaAUGGCGG- -5'
2046 3' -49.1 NC_001347.2 + 38960 0.66 0.999783
Target:  5'- cUCGGGAug--GCCGgcCUUGUCGCCc -3'
miRNA:   3'- aAGUCCUuacaUGGCaaGAAUGGCGG- -5'
2046 3' -49.1 NC_001347.2 + 176325 0.66 0.999783
Target:  5'- aUCAGGAGUuuaUugUGUUCUc-CUGCCg -3'
miRNA:   3'- aAGUCCUUAc--AugGCAAGAauGGCGG- -5'
2046 3' -49.1 NC_001347.2 + 4401 0.67 0.999334
Target:  5'- aUCGGGAGcgGUACCGUUUUcccaugaCGCUc -3'
miRNA:   3'- aAGUCCUUa-CAUGGCAAGAaug----GCGG- -5'
2046 3' -49.1 NC_001347.2 + 68030 0.67 0.999334
Target:  5'- --gAGGAGUGcugACCGccgCUcccGCCGCCg -3'
miRNA:   3'- aagUCCUUACa--UGGCaa-GAa--UGGCGG- -5'
2046 3' -49.1 NC_001347.2 + 31987 0.67 0.998715
Target:  5'- -cCAGGAcuGUGUACCGUguauccagcgCUUACuaucugcgguggcaCGCCu -3'
miRNA:   3'- aaGUCCU--UACAUGGCAa---------GAAUG--------------GCGG- -5'
2046 3' -49.1 NC_001347.2 + 67692 0.68 0.998507
Target:  5'- ---cGGAcUGcUGCuccgucuCGUUCUUGCCGCCg -3'
miRNA:   3'- aaguCCUuAC-AUG-------GCAAGAAUGGCGG- -5'
2046 3' -49.1 NC_001347.2 + 145583 0.68 0.998239
Target:  5'- cUUCAGGGAgccggACCGacCUUgGCUGCCa -3'
miRNA:   3'- -AAGUCCUUaca--UGGCaaGAA-UGGCGG- -5'
2046 3' -49.1 NC_001347.2 + 200326 0.69 0.995906
Target:  5'- -gCAGGccaGGUGUugcCCGUggUCUgGCCGCCg -3'
miRNA:   3'- aaGUCC---UUACAu--GGCA--AGAaUGGCGG- -5'
2046 3' -49.1 NC_001347.2 + 48845 0.7 0.987421
Target:  5'- gUCAGGGcgGUGCggCGUUCgcgUGCacgCGCCa -3'
miRNA:   3'- aAGUCCUuaCAUG--GCAAGa--AUG---GCGG- -5'
2046 3' -49.1 NC_001347.2 + 40591 0.73 0.946828
Target:  5'- gUCGGGggUuuucgAgCGUUCUgGCCGCCg -3'
miRNA:   3'- aAGUCCuuAca---UgGCAAGAaUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.