miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2046 5' -54.4 NC_001347.2 + 208710 0.66 0.983803
Target:  5'- aCGUCGGCcACcaGCGcCGUGGUCUCg -3'
miRNA:   3'- aGCAGUUGuUGc-UGCcGCGCCAGAGa -5'
2046 5' -54.4 NC_001347.2 + 192733 0.66 0.983803
Target:  5'- cCGUCAACAGCGugccuuuuGCcGCGCGaGUCg-- -3'
miRNA:   3'- aGCAGUUGUUGC--------UGcCGCGC-CAGaga -5'
2046 5' -54.4 NC_001347.2 + 189588 0.66 0.981914
Target:  5'- aCGUCAuCAAgGAacgugacuucUGGCGCGGgacCUCUu -3'
miRNA:   3'- aGCAGUuGUUgCU----------GCCGCGCCa--GAGA- -5'
2046 5' -54.4 NC_001347.2 + 128455 0.66 0.981914
Target:  5'- cCGUCaAGCGgcGCGACGGCGCGcG-Ca-- -3'
miRNA:   3'- aGCAG-UUGU--UGCUGCCGCGC-CaGaga -5'
2046 5' -54.4 NC_001347.2 + 151914 0.66 0.980703
Target:  5'- ---cCGACAACGGugauucuguaaccgcCGGCGUGGUUUCc -3'
miRNA:   3'- agcaGUUGUUGCU---------------GCCGCGCCAGAGa -5'
2046 5' -54.4 NC_001347.2 + 207126 0.66 0.979216
Target:  5'- cUCGUCGGCGcuuACGGagggguguuUGGCgagcccggauccggGCGGUCUCg -3'
miRNA:   3'- -AGCAGUUGU---UGCU---------GCCG--------------CGCCAGAGa -5'
2046 5' -54.4 NC_001347.2 + 159464 0.66 0.977645
Target:  5'- cCGcUCGAUGACGAuguCGGCGCGGcggCUgCUg -3'
miRNA:   3'- aGC-AGUUGUUGCU---GCCGCGCCa--GA-GA- -5'
2046 5' -54.4 NC_001347.2 + 173534 0.66 0.977645
Target:  5'- -aGUCGcgugGCGGCGGCGGUggugGCGGcagccUCUCUu -3'
miRNA:   3'- agCAGU----UGUUGCUGCCG----CGCC-----AGAGA- -5'
2046 5' -54.4 NC_001347.2 + 153246 0.66 0.977645
Target:  5'- gCGUCGGcCGGCGACGGCgguucgccGUGGUUg-- -3'
miRNA:   3'- aGCAGUU-GUUGCUGCCG--------CGCCAGaga -5'
2046 5' -54.4 NC_001347.2 + 156533 0.67 0.972676
Target:  5'- aUGUCGGCcgcgcuuacgcgAACGGCGGgaaaGCGGUcCUCUc -3'
miRNA:   3'- aGCAGUUG------------UUGCUGCCg---CGCCA-GAGA- -5'
2046 5' -54.4 NC_001347.2 + 184951 0.67 0.972676
Target:  5'- cUCGUCGGC--CGGCGuGgGCGG-CUCg -3'
miRNA:   3'- -AGCAGUUGuuGCUGC-CgCGCCaGAGa -5'
2046 5' -54.4 NC_001347.2 + 142433 0.67 0.969913
Target:  5'- gCGUCGgcGCGGCGucCGGCgucgggggugGCGGUCUUc -3'
miRNA:   3'- aGCAGU--UGUUGCu-GCCG----------CGCCAGAGa -5'
2046 5' -54.4 NC_001347.2 + 151250 0.67 0.969047
Target:  5'- aUCGUCAgggggcucgaacgaACGGCGGguggaGGCGCgGGUCaUCUa -3'
miRNA:   3'- -AGCAGU--------------UGUUGCUg----CCGCG-CCAG-AGA- -5'
2046 5' -54.4 NC_001347.2 + 139112 0.67 0.968162
Target:  5'- gCGUCucugugcGCAcgccugugcuuuguuACGACGGCGgGGUgCUCa -3'
miRNA:   3'- aGCAGu------UGU---------------UGCUGCCGCgCCA-GAGa -5'
2046 5' -54.4 NC_001347.2 + 152296 0.67 0.966956
Target:  5'- cUGUUgagaAACAGCGGCGGCGgUGGUgaCUg -3'
miRNA:   3'- aGCAG----UUGUUGCUGCCGC-GCCAgaGA- -5'
2046 5' -54.4 NC_001347.2 + 21630 0.67 0.966956
Target:  5'- cCGUCGccGCAGgccuuUGuCGGCGCGG-CUCUu -3'
miRNA:   3'- aGCAGU--UGUU-----GCuGCCGCGCCaGAGA- -5'
2046 5' -54.4 NC_001347.2 + 96659 0.67 0.963798
Target:  5'- gCGUCAcgcuggccgaagGC-ACGACGGCGCGuuaCUCg -3'
miRNA:   3'- aGCAGU------------UGuUGCUGCCGCGCca-GAGa -5'
2046 5' -54.4 NC_001347.2 + 93227 0.67 0.963798
Target:  5'- cUCGcugagCGGCAGCGGCGGCacccCGG-CUCa -3'
miRNA:   3'- -AGCa----GUUGUUGCUGCCGc---GCCaGAGa -5'
2046 5' -54.4 NC_001347.2 + 160643 0.67 0.963798
Target:  5'- gCG-CAGCAcgguACcGCGGCcCGGUCUCUg -3'
miRNA:   3'- aGCaGUUGU----UGcUGCCGcGCCAGAGA- -5'
2046 5' -54.4 NC_001347.2 + 7508 0.67 0.962811
Target:  5'- uUCGUcCAACAuCGACGGUGCacccguuacucggaGGUgUCa -3'
miRNA:   3'- -AGCA-GUUGUuGCUGCCGCG--------------CCAgAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.