miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2046 5' -54.4 NC_001347.2 + 36426 0.78 0.516409
Target:  5'- gUGUUGcCGACGGCGGCGCGGUCcgUCg -3'
miRNA:   3'- aGCAGUuGUUGCUGCCGCGCCAG--AGa -5'
2046 5' -54.4 NC_001347.2 + 159700 0.75 0.684049
Target:  5'- gUCG-CAGCAcgcguACGACGGUGUGGUC-CUg -3'
miRNA:   3'- -AGCaGUUGU-----UGCUGCCGCGCCAGaGA- -5'
2046 5' -54.4 NC_001347.2 + 15627 0.74 0.693902
Target:  5'- uUCGUCGACGcGCGAgGGCGCGGa---- -3'
miRNA:   3'- -AGCAGUUGU-UGCUgCCGCGCCagaga -5'
2046 5' -54.4 NC_001347.2 + 140134 0.74 0.693902
Target:  5'- aCGUCuACAACGACGcGCGCaaGGUgCUCa -3'
miRNA:   3'- aGCAGuUGUUGCUGC-CGCG--CCA-GAGa -5'
2046 5' -54.4 NC_001347.2 + 174434 0.74 0.713452
Target:  5'- gCGUCAGCGGC-ACGGUGCuGcGUCUCa -3'
miRNA:   3'- aGCAGUUGUUGcUGCCGCG-C-CAGAGa -5'
2046 5' -54.4 NC_001347.2 + 38558 0.73 0.761026
Target:  5'- cCGUCAGCAGCGACgcggGGUGCGG-Cg-- -3'
miRNA:   3'- aGCAGUUGUUGCUG----CCGCGCCaGaga -5'
2046 5' -54.4 NC_001347.2 + 89406 0.73 0.770249
Target:  5'- aCGUCGgugACAGCcGCGGCGCaGUCUUg -3'
miRNA:   3'- aGCAGU---UGUUGcUGCCGCGcCAGAGa -5'
2046 5' -54.4 NC_001347.2 + 134878 0.72 0.814444
Target:  5'- -aGUCGACAcgccggguGgGACGGuCGUGGUCUCc -3'
miRNA:   3'- agCAGUUGU--------UgCUGCC-GCGCCAGAGa -5'
2046 5' -54.4 NC_001347.2 + 192178 0.72 0.831076
Target:  5'- cCGUCuccggaugAGCGGCcGCGGCGCGGgCUCg -3'
miRNA:   3'- aGCAG--------UUGUUGcUGCCGCGCCaGAGa -5'
2046 5' -54.4 NC_001347.2 + 112473 0.71 0.838339
Target:  5'- uUCGUCcgaggacGACGACGACGccgcCGCGGUUUCc -3'
miRNA:   3'- -AGCAG-------UUGUUGCUGCc---GCGCCAGAGa -5'
2046 5' -54.4 NC_001347.2 + 112679 0.71 0.869531
Target:  5'- aCGgauGCAAaGACGGCGCGGgCUCg -3'
miRNA:   3'- aGCaguUGUUgCUGCCGCGCCaGAGa -5'
2046 5' -54.4 NC_001347.2 + 2203 0.71 0.869531
Target:  5'- --uUCGACAGCGAUGGCG-GGUC-Cg -3'
miRNA:   3'- agcAGUUGUUGCUGCCGCgCCAGaGa -5'
2046 5' -54.4 NC_001347.2 + 151092 0.7 0.896054
Target:  5'- aUCGgucgCGACAugcuagaGCGcACGGCGCGGUUcaUCa -3'
miRNA:   3'- -AGCa---GUUGU-------UGC-UGCCGCGCCAG--AGa -5'
2046 5' -54.4 NC_001347.2 + 191967 0.7 0.907187
Target:  5'- cUCGUCGcugucgccgccaccGCAGCGGCGGCGaCGGa---- -3'
miRNA:   3'- -AGCAGU--------------UGUUGCUGCCGC-GCCagaga -5'
2046 5' -54.4 NC_001347.2 + 106720 0.7 0.908972
Target:  5'- aUCGUgAAC-GCGGCauucuauGCGUGGUCUCUa -3'
miRNA:   3'- -AGCAgUUGuUGCUGc------CGCGCCAGAGA- -5'
2046 5' -54.4 NC_001347.2 + 192055 0.7 0.908972
Target:  5'- aCGguggCGGCGACGAcaCGGCGaCGGUCa-- -3'
miRNA:   3'- aGCa---GUUGUUGCU--GCCGC-GCCAGaga -5'
2046 5' -54.4 NC_001347.2 + 117890 0.7 0.908972
Target:  5'- aCGUCAGacggGGCGGCGGCG-GGUCcCg -3'
miRNA:   3'- aGCAGUUg---UUGCUGCCGCgCCAGaGa -5'
2046 5' -54.4 NC_001347.2 + 129499 0.7 0.908972
Target:  5'- gCGUCuGCAGCG-CGGCGCcGcCUCg -3'
miRNA:   3'- aGCAGuUGUUGCuGCCGCGcCaGAGa -5'
2046 5' -54.4 NC_001347.2 + 194370 0.7 0.908972
Target:  5'- --uUCAGCAGCaucUGGCGCGGUCUg- -3'
miRNA:   3'- agcAGUUGUUGcu-GCCGCGCCAGAga -5'
2046 5' -54.4 NC_001347.2 + 148600 0.69 0.914777
Target:  5'- gCGgCGGCGugacCGGCGGUGCGGUCg-- -3'
miRNA:   3'- aGCaGUUGUu---GCUGCCGCGCCAGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.