miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2046 5' -54.4 NC_001347.2 + 95442 0.68 0.961806
Target:  5'- gUCG-CGACGACGACacuuucguuuuuaugGGCGCGcGUCa-- -3'
miRNA:   3'- -AGCaGUUGUUGCUG---------------CCGCGC-CAGaga -5'
2046 5' -54.4 NC_001347.2 + 63825 0.68 0.960436
Target:  5'- gCGgCGGCGGCGAUGGCGgGG-CUg- -3'
miRNA:   3'- aGCaGUUGUUGCUGCCGCgCCaGAga -5'
2046 5' -54.4 NC_001347.2 + 89742 0.68 0.953079
Target:  5'- gUCGUCGccuGCGGCGuCGGCGCaGGgaaUUCg -3'
miRNA:   3'- -AGCAGU---UGUUGCuGCCGCG-CCa--GAGa -5'
2046 5' -54.4 NC_001347.2 + 92776 0.68 0.948663
Target:  5'- aUCGUCGAacggcaAGCGACGGCccgauacucGCGGUguuccggCUCUu -3'
miRNA:   3'- -AGCAGUUg-----UUGCUGCCG---------CGCCA-------GAGA- -5'
2046 5' -54.4 NC_001347.2 + 111267 0.68 0.944852
Target:  5'- aCGUCAu--GCG-CGGCGCcGUCUCc -3'
miRNA:   3'- aGCAGUuguUGCuGCCGCGcCAGAGa -5'
2046 5' -54.4 NC_001347.2 + 82724 0.68 0.940405
Target:  5'- gCGgugguGCAGCGGCGGCugaGCGGUCa-- -3'
miRNA:   3'- aGCagu--UGUUGCUGCCG---CGCCAGaga -5'
2046 5' -54.4 NC_001347.2 + 37998 0.68 0.940405
Target:  5'- cUCGggCAGCAGCcGCcGCGCGGcCUCg -3'
miRNA:   3'- -AGCa-GUUGUUGcUGcCGCGCCaGAGa -5'
2046 5' -54.4 NC_001347.2 + 128228 0.69 0.935733
Target:  5'- gCGUUAu---CGACGcCGCGGUCUCa -3'
miRNA:   3'- aGCAGUuguuGCUGCcGCGCCAGAGa -5'
2046 5' -54.4 NC_001347.2 + 22922 0.69 0.935733
Target:  5'- gCGgacGCAuCGACGGCGUGaGUCUCc -3'
miRNA:   3'- aGCaguUGUuGCUGCCGCGC-CAGAGa -5'
2046 5' -54.4 NC_001347.2 + 94798 0.69 0.935733
Target:  5'- aCGUCGGCGuaACGcCGGCGUGcGUCa-- -3'
miRNA:   3'- aGCAGUUGU--UGCuGCCGCGC-CAGaga -5'
2046 5' -54.4 NC_001347.2 + 157803 0.69 0.935733
Target:  5'- gUGUCAcCAACGGCaGcCGCGGUCg-- -3'
miRNA:   3'- aGCAGUuGUUGCUGcC-GCGCCAGaga -5'
2046 5' -54.4 NC_001347.2 + 198082 0.69 0.930835
Target:  5'- gUCG-CGGCGgucGCGACGGUGaCGGUCcCg -3'
miRNA:   3'- -AGCaGUUGU---UGCUGCCGC-GCCAGaGa -5'
2046 5' -54.4 NC_001347.2 + 109466 0.69 0.92571
Target:  5'- gCGUCAcCGGCGGCGGCgccaugGCGGgcgcCUCc -3'
miRNA:   3'- aGCAGUuGUUGCUGCCG------CGCCa---GAGa -5'
2046 5' -54.4 NC_001347.2 + 47187 0.69 0.920357
Target:  5'- gCGUCcgaaGGCGAgGAUGGCaUGGUCUCg -3'
miRNA:   3'- aGCAG----UUGUUgCUGCCGcGCCAGAGa -5'
2046 5' -54.4 NC_001347.2 + 100864 0.69 0.917036
Target:  5'- gCGUCA-CAGCcgaGGCGGCGCGGcgcagcgccggccauUCUCc -3'
miRNA:   3'- aGCAGUuGUUG---CUGCCGCGCC---------------AGAGa -5'
2046 5' -54.4 NC_001347.2 + 148600 0.69 0.914777
Target:  5'- gCGgCGGCGugacCGGCGGUGCGGUCg-- -3'
miRNA:   3'- aGCaGUUGUu---GCUGCCGCGCCAGaga -5'
2046 5' -54.4 NC_001347.2 + 117890 0.7 0.908972
Target:  5'- aCGUCAGacggGGCGGCGGCG-GGUCcCg -3'
miRNA:   3'- aGCAGUUg---UUGCUGCCGCgCCAGaGa -5'
2046 5' -54.4 NC_001347.2 + 192055 0.7 0.908972
Target:  5'- aCGguggCGGCGACGAcaCGGCGaCGGUCa-- -3'
miRNA:   3'- aGCa---GUUGUUGCU--GCCGC-GCCAGaga -5'
2046 5' -54.4 NC_001347.2 + 194370 0.7 0.908972
Target:  5'- --uUCAGCAGCaucUGGCGCGGUCUg- -3'
miRNA:   3'- agcAGUUGUUGcu-GCCGCGCCAGAga -5'
2046 5' -54.4 NC_001347.2 + 129499 0.7 0.908972
Target:  5'- gCGUCuGCAGCG-CGGCGCcGcCUCg -3'
miRNA:   3'- aGCAGuUGUUGCuGCCGCGcCaGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.