miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2046 5' -54.4 NC_001347.2 + 2203 0.71 0.869531
Target:  5'- --uUCGACAGCGAUGGCG-GGUC-Cg -3'
miRNA:   3'- agcAGUUGUUGCUGCCGCgCCAGaGa -5'
2046 5' -54.4 NC_001347.2 + 7508 0.67 0.962811
Target:  5'- uUCGUcCAACAuCGACGGUGCacccguuacucggaGGUgUCa -3'
miRNA:   3'- -AGCA-GUUGUuGCUGCCGCG--------------CCAgAGa -5'
2046 5' -54.4 NC_001347.2 + 15627 0.74 0.693902
Target:  5'- uUCGUCGACGcGCGAgGGCGCGGa---- -3'
miRNA:   3'- -AGCAGUUGU-UGCUgCCGCGCCagaga -5'
2046 5' -54.4 NC_001347.2 + 21630 0.67 0.966956
Target:  5'- cCGUCGccGCAGgccuuUGuCGGCGCGG-CUCUu -3'
miRNA:   3'- aGCAGU--UGUU-----GCuGCCGCGCCaGAGA- -5'
2046 5' -54.4 NC_001347.2 + 22922 0.69 0.935733
Target:  5'- gCGgacGCAuCGACGGCGUGaGUCUCc -3'
miRNA:   3'- aGCaguUGUuGCUGCCGCGC-CAGAGa -5'
2046 5' -54.4 NC_001347.2 + 36426 0.78 0.516409
Target:  5'- gUGUUGcCGACGGCGGCGCGGUCcgUCg -3'
miRNA:   3'- aGCAGUuGUUGCUGCCGCGCCAG--AGa -5'
2046 5' -54.4 NC_001347.2 + 37998 0.68 0.940405
Target:  5'- cUCGggCAGCAGCcGCcGCGCGGcCUCg -3'
miRNA:   3'- -AGCa-GUUGUUGcUGcCGCGCCaGAGa -5'
2046 5' -54.4 NC_001347.2 + 38558 0.73 0.761026
Target:  5'- cCGUCAGCAGCGACgcggGGUGCGG-Cg-- -3'
miRNA:   3'- aGCAGUUGUUGCUG----CCGCGCCaGaga -5'
2046 5' -54.4 NC_001347.2 + 47187 0.69 0.920357
Target:  5'- gCGUCcgaaGGCGAgGAUGGCaUGGUCUCg -3'
miRNA:   3'- aGCAG----UUGUUgCUGCCGcGCCAGAGa -5'
2046 5' -54.4 NC_001347.2 + 63825 0.68 0.960436
Target:  5'- gCGgCGGCGGCGAUGGCGgGG-CUg- -3'
miRNA:   3'- aGCaGUUGUUGCUGCCGCgCCaGAga -5'
2046 5' -54.4 NC_001347.2 + 82724 0.68 0.940405
Target:  5'- gCGgugguGCAGCGGCGGCugaGCGGUCa-- -3'
miRNA:   3'- aGCagu--UGUUGCUGCCG---CGCCAGaga -5'
2046 5' -54.4 NC_001347.2 + 89406 0.73 0.770249
Target:  5'- aCGUCGgugACAGCcGCGGCGCaGUCUUg -3'
miRNA:   3'- aGCAGU---UGUUGcUGCCGCGcCAGAGa -5'
2046 5' -54.4 NC_001347.2 + 89742 0.68 0.953079
Target:  5'- gUCGUCGccuGCGGCGuCGGCGCaGGgaaUUCg -3'
miRNA:   3'- -AGCAGU---UGUUGCuGCCGCG-CCa--GAGa -5'
2046 5' -54.4 NC_001347.2 + 92776 0.68 0.948663
Target:  5'- aUCGUCGAacggcaAGCGACGGCccgauacucGCGGUguuccggCUCUu -3'
miRNA:   3'- -AGCAGUUg-----UUGCUGCCG---------CGCCA-------GAGA- -5'
2046 5' -54.4 NC_001347.2 + 93227 0.67 0.963798
Target:  5'- cUCGcugagCGGCAGCGGCGGCacccCGG-CUCa -3'
miRNA:   3'- -AGCa----GUUGUUGCUGCCGc---GCCaGAGa -5'
2046 5' -54.4 NC_001347.2 + 94798 0.69 0.935733
Target:  5'- aCGUCGGCGuaACGcCGGCGUGcGUCa-- -3'
miRNA:   3'- aGCAGUUGU--UGCuGCCGCGC-CAGaga -5'
2046 5' -54.4 NC_001347.2 + 95442 0.68 0.961806
Target:  5'- gUCG-CGACGACGACacuuucguuuuuaugGGCGCGcGUCa-- -3'
miRNA:   3'- -AGCaGUUGUUGCUG---------------CCGCGC-CAGaga -5'
2046 5' -54.4 NC_001347.2 + 96659 0.67 0.963798
Target:  5'- gCGUCAcgcuggccgaagGC-ACGACGGCGCGuuaCUCg -3'
miRNA:   3'- aGCAGU------------UGuUGCUGCCGCGCca-GAGa -5'
2046 5' -54.4 NC_001347.2 + 100864 0.69 0.917036
Target:  5'- gCGUCA-CAGCcgaGGCGGCGCGGcgcagcgccggccauUCUCc -3'
miRNA:   3'- aGCAGUuGUUG---CUGCCGCGCC---------------AGAGa -5'
2046 5' -54.4 NC_001347.2 + 106720 0.7 0.908972
Target:  5'- aUCGUgAAC-GCGGCauucuauGCGUGGUCUCUa -3'
miRNA:   3'- -AGCAgUUGuUGCUGc------CGCGCCAGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.