miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2046 5' -54.4 NC_001347.2 + 208710 0.66 0.983803
Target:  5'- aCGUCGGCcACcaGCGcCGUGGUCUCg -3'
miRNA:   3'- aGCAGUUGuUGc-UGCcGCGCCAGAGa -5'
2046 5' -54.4 NC_001347.2 + 207126 0.66 0.979216
Target:  5'- cUCGUCGGCGcuuACGGagggguguuUGGCgagcccggauccggGCGGUCUCg -3'
miRNA:   3'- -AGCAGUUGU---UGCU---------GCCG--------------CGCCAGAGa -5'
2046 5' -54.4 NC_001347.2 + 198082 0.69 0.930835
Target:  5'- gUCG-CGGCGgucGCGACGGUGaCGGUCcCg -3'
miRNA:   3'- -AGCaGUUGU---UGCUGCCGC-GCCAGaGa -5'
2046 5' -54.4 NC_001347.2 + 194370 0.7 0.908972
Target:  5'- --uUCAGCAGCaucUGGCGCGGUCUg- -3'
miRNA:   3'- agcAGUUGUUGcu-GCCGCGCCAGAga -5'
2046 5' -54.4 NC_001347.2 + 192733 0.66 0.983803
Target:  5'- cCGUCAACAGCGugccuuuuGCcGCGCGaGUCg-- -3'
miRNA:   3'- aGCAGUUGUUGC--------UGcCGCGC-CAGaga -5'
2046 5' -54.4 NC_001347.2 + 192178 0.72 0.831076
Target:  5'- cCGUCuccggaugAGCGGCcGCGGCGCGGgCUCg -3'
miRNA:   3'- aGCAG--------UUGUUGcUGCCGCGCCaGAGa -5'
2046 5' -54.4 NC_001347.2 + 192055 0.7 0.908972
Target:  5'- aCGguggCGGCGACGAcaCGGCGaCGGUCa-- -3'
miRNA:   3'- aGCa---GUUGUUGCU--GCCGC-GCCAGaga -5'
2046 5' -54.4 NC_001347.2 + 191967 0.7 0.907187
Target:  5'- cUCGUCGcugucgccgccaccGCAGCGGCGGCGaCGGa---- -3'
miRNA:   3'- -AGCAGU--------------UGUUGCUGCCGC-GCCagaga -5'
2046 5' -54.4 NC_001347.2 + 189588 0.66 0.981914
Target:  5'- aCGUCAuCAAgGAacgugacuucUGGCGCGGgacCUCUu -3'
miRNA:   3'- aGCAGUuGUUgCU----------GCCGCGCCa--GAGA- -5'
2046 5' -54.4 NC_001347.2 + 184951 0.67 0.972676
Target:  5'- cUCGUCGGC--CGGCGuGgGCGG-CUCg -3'
miRNA:   3'- -AGCAGUUGuuGCUGC-CgCGCCaGAGa -5'
2046 5' -54.4 NC_001347.2 + 174434 0.74 0.713452
Target:  5'- gCGUCAGCGGC-ACGGUGCuGcGUCUCa -3'
miRNA:   3'- aGCAGUUGUUGcUGCCGCG-C-CAGAGa -5'
2046 5' -54.4 NC_001347.2 + 173534 0.66 0.977645
Target:  5'- -aGUCGcgugGCGGCGGCGGUggugGCGGcagccUCUCUu -3'
miRNA:   3'- agCAGU----UGUUGCUGCCG----CGCC-----AGAGA- -5'
2046 5' -54.4 NC_001347.2 + 160643 0.67 0.963798
Target:  5'- gCG-CAGCAcgguACcGCGGCcCGGUCUCUg -3'
miRNA:   3'- aGCaGUUGU----UGcUGCCGcGCCAGAGA- -5'
2046 5' -54.4 NC_001347.2 + 159700 0.75 0.684049
Target:  5'- gUCG-CAGCAcgcguACGACGGUGUGGUC-CUg -3'
miRNA:   3'- -AGCaGUUGU-----UGCUGCCGCGCCAGaGA- -5'
2046 5' -54.4 NC_001347.2 + 159464 0.66 0.977645
Target:  5'- cCGcUCGAUGACGAuguCGGCGCGGcggCUgCUg -3'
miRNA:   3'- aGC-AGUUGUUGCU---GCCGCGCCa--GA-GA- -5'
2046 5' -54.4 NC_001347.2 + 157803 0.69 0.935733
Target:  5'- gUGUCAcCAACGGCaGcCGCGGUCg-- -3'
miRNA:   3'- aGCAGUuGUUGCUGcC-GCGCCAGaga -5'
2046 5' -54.4 NC_001347.2 + 156533 0.67 0.972676
Target:  5'- aUGUCGGCcgcgcuuacgcgAACGGCGGgaaaGCGGUcCUCUc -3'
miRNA:   3'- aGCAGUUG------------UUGCUGCCg---CGCCA-GAGA- -5'
2046 5' -54.4 NC_001347.2 + 153246 0.66 0.977645
Target:  5'- gCGUCGGcCGGCGACGGCgguucgccGUGGUUg-- -3'
miRNA:   3'- aGCAGUU-GUUGCUGCCG--------CGCCAGaga -5'
2046 5' -54.4 NC_001347.2 + 152296 0.67 0.966956
Target:  5'- cUGUUgagaAACAGCGGCGGCGgUGGUgaCUg -3'
miRNA:   3'- aGCAG----UUGUUGCUGCCGC-GCCAgaGA- -5'
2046 5' -54.4 NC_001347.2 + 151914 0.66 0.980703
Target:  5'- ---cCGACAACGGugauucuguaaccgcCGGCGUGGUUUCc -3'
miRNA:   3'- agcaGUUGUUGCU---------------GCCGCGCCAGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.