miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2046 5' -54.4 NC_001347.2 + 151250 0.67 0.969047
Target:  5'- aUCGUCAgggggcucgaacgaACGGCGGguggaGGCGCgGGUCaUCUa -3'
miRNA:   3'- -AGCAGU--------------UGUUGCUg----CCGCG-CCAG-AGA- -5'
2046 5' -54.4 NC_001347.2 + 151092 0.7 0.896054
Target:  5'- aUCGgucgCGACAugcuagaGCGcACGGCGCGGUUcaUCa -3'
miRNA:   3'- -AGCa---GUUGU-------UGC-UGCCGCGCCAG--AGa -5'
2046 5' -54.4 NC_001347.2 + 148600 0.69 0.914777
Target:  5'- gCGgCGGCGugacCGGCGGUGCGGUCg-- -3'
miRNA:   3'- aGCaGUUGUu---GCUGCCGCGCCAGaga -5'
2046 5' -54.4 NC_001347.2 + 142433 0.67 0.969913
Target:  5'- gCGUCGgcGCGGCGucCGGCgucgggggugGCGGUCUUc -3'
miRNA:   3'- aGCAGU--UGUUGCu-GCCG----------CGCCAGAGa -5'
2046 5' -54.4 NC_001347.2 + 140134 0.74 0.693902
Target:  5'- aCGUCuACAACGACGcGCGCaaGGUgCUCa -3'
miRNA:   3'- aGCAGuUGUUGCUGC-CGCG--CCA-GAGa -5'
2046 5' -54.4 NC_001347.2 + 139112 0.67 0.968162
Target:  5'- gCGUCucugugcGCAcgccugugcuuuguuACGACGGCGgGGUgCUCa -3'
miRNA:   3'- aGCAGu------UGU---------------UGCUGCCGCgCCA-GAGa -5'
2046 5' -54.4 NC_001347.2 + 134878 0.72 0.814444
Target:  5'- -aGUCGACAcgccggguGgGACGGuCGUGGUCUCc -3'
miRNA:   3'- agCAGUUGU--------UgCUGCC-GCGCCAGAGa -5'
2046 5' -54.4 NC_001347.2 + 129499 0.7 0.908972
Target:  5'- gCGUCuGCAGCG-CGGCGCcGcCUCg -3'
miRNA:   3'- aGCAGuUGUUGCuGCCGCGcCaGAGa -5'
2046 5' -54.4 NC_001347.2 + 128455 0.66 0.981914
Target:  5'- cCGUCaAGCGgcGCGACGGCGCGcG-Ca-- -3'
miRNA:   3'- aGCAG-UUGU--UGCUGCCGCGC-CaGaga -5'
2046 5' -54.4 NC_001347.2 + 128228 0.69 0.935733
Target:  5'- gCGUUAu---CGACGcCGCGGUCUCa -3'
miRNA:   3'- aGCAGUuguuGCUGCcGCGCCAGAGa -5'
2046 5' -54.4 NC_001347.2 + 117890 0.7 0.908972
Target:  5'- aCGUCAGacggGGCGGCGGCG-GGUCcCg -3'
miRNA:   3'- aGCAGUUg---UUGCUGCCGCgCCAGaGa -5'
2046 5' -54.4 NC_001347.2 + 112679 0.71 0.869531
Target:  5'- aCGgauGCAAaGACGGCGCGGgCUCg -3'
miRNA:   3'- aGCaguUGUUgCUGCCGCGCCaGAGa -5'
2046 5' -54.4 NC_001347.2 + 112473 0.71 0.838339
Target:  5'- uUCGUCcgaggacGACGACGACGccgcCGCGGUUUCc -3'
miRNA:   3'- -AGCAG-------UUGUUGCUGCc---GCGCCAGAGa -5'
2046 5' -54.4 NC_001347.2 + 111267 0.68 0.944852
Target:  5'- aCGUCAu--GCG-CGGCGCcGUCUCc -3'
miRNA:   3'- aGCAGUuguUGCuGCCGCGcCAGAGa -5'
2046 5' -54.4 NC_001347.2 + 109466 0.69 0.92571
Target:  5'- gCGUCAcCGGCGGCGGCgccaugGCGGgcgcCUCc -3'
miRNA:   3'- aGCAGUuGUUGCUGCCG------CGCCa---GAGa -5'
2046 5' -54.4 NC_001347.2 + 106720 0.7 0.908972
Target:  5'- aUCGUgAAC-GCGGCauucuauGCGUGGUCUCUa -3'
miRNA:   3'- -AGCAgUUGuUGCUGc------CGCGCCAGAGA- -5'
2046 5' -54.4 NC_001347.2 + 100864 0.69 0.917036
Target:  5'- gCGUCA-CAGCcgaGGCGGCGCGGcgcagcgccggccauUCUCc -3'
miRNA:   3'- aGCAGUuGUUG---CUGCCGCGCC---------------AGAGa -5'
2046 5' -54.4 NC_001347.2 + 96659 0.67 0.963798
Target:  5'- gCGUCAcgcuggccgaagGC-ACGACGGCGCGuuaCUCg -3'
miRNA:   3'- aGCAGU------------UGuUGCUGCCGCGCca-GAGa -5'
2046 5' -54.4 NC_001347.2 + 95442 0.68 0.961806
Target:  5'- gUCG-CGACGACGACacuuucguuuuuaugGGCGCGcGUCa-- -3'
miRNA:   3'- -AGCaGUUGUUGCUG---------------CCGCGC-CAGaga -5'
2046 5' -54.4 NC_001347.2 + 94798 0.69 0.935733
Target:  5'- aCGUCGGCGuaACGcCGGCGUGcGUCa-- -3'
miRNA:   3'- aGCAGUUGU--UGCuGCCGCGC-CAGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.