Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2046 | 5' | -54.4 | NC_001347.2 | + | 151250 | 0.67 | 0.969047 |
Target: 5'- aUCGUCAgggggcucgaacgaACGGCGGguggaGGCGCgGGUCaUCUa -3' miRNA: 3'- -AGCAGU--------------UGUUGCUg----CCGCG-CCAG-AGA- -5' |
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2046 | 5' | -54.4 | NC_001347.2 | + | 152296 | 0.67 | 0.966956 |
Target: 5'- cUGUUgagaAACAGCGGCGGCGgUGGUgaCUg -3' miRNA: 3'- aGCAG----UUGUUGCUGCCGC-GCCAgaGA- -5' |
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2046 | 5' | -54.4 | NC_001347.2 | + | 139112 | 0.67 | 0.968162 |
Target: 5'- gCGUCucugugcGCAcgccugugcuuuguuACGACGGCGgGGUgCUCa -3' miRNA: 3'- aGCAGu------UGU---------------UGCUGCCGCgCCA-GAGa -5' |
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2046 | 5' | -54.4 | NC_001347.2 | + | 157803 | 0.69 | 0.935733 |
Target: 5'- gUGUCAcCAACGGCaGcCGCGGUCg-- -3' miRNA: 3'- aGCAGUuGUUGCUGcC-GCGCCAGaga -5' |
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2046 | 5' | -54.4 | NC_001347.2 | + | 111267 | 0.68 | 0.944852 |
Target: 5'- aCGUCAu--GCG-CGGCGCcGUCUCc -3' miRNA: 3'- aGCAGUuguUGCuGCCGCGcCAGAGa -5' |
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2046 | 5' | -54.4 | NC_001347.2 | + | 92776 | 0.68 | 0.948663 |
Target: 5'- aUCGUCGAacggcaAGCGACGGCccgauacucGCGGUguuccggCUCUu -3' miRNA: 3'- -AGCAGUUg-----UUGCUGCCG---------CGCCA-------GAGA- -5' |
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2046 | 5' | -54.4 | NC_001347.2 | + | 89742 | 0.68 | 0.953079 |
Target: 5'- gUCGUCGccuGCGGCGuCGGCGCaGGgaaUUCg -3' miRNA: 3'- -AGCAGU---UGUUGCuGCCGCG-CCa--GAGa -5' |
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2046 | 5' | -54.4 | NC_001347.2 | + | 95442 | 0.68 | 0.961806 |
Target: 5'- gUCG-CGACGACGACacuuucguuuuuaugGGCGCGcGUCa-- -3' miRNA: 3'- -AGCaGUUGUUGCUG---------------CCGCGC-CAGaga -5' |
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2046 | 5' | -54.4 | NC_001347.2 | + | 63825 | 0.68 | 0.960436 |
Target: 5'- gCGgCGGCGGCGAUGGCGgGG-CUg- -3' miRNA: 3'- aGCaGUUGUUGCUGCCGCgCCaGAga -5' |
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2046 | 5' | -54.4 | NC_001347.2 | + | 7508 | 0.67 | 0.962811 |
Target: 5'- uUCGUcCAACAuCGACGGUGCacccguuacucggaGGUgUCa -3' miRNA: 3'- -AGCA-GUUGUuGCUGCCGCG--------------CCAgAGa -5' |
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2046 | 5' | -54.4 | NC_001347.2 | + | 96659 | 0.67 | 0.963798 |
Target: 5'- gCGUCAcgcuggccgaagGC-ACGACGGCGCGuuaCUCg -3' miRNA: 3'- aGCAGU------------UGuUGCUGCCGCGCca-GAGa -5' |
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2046 | 5' | -54.4 | NC_001347.2 | + | 93227 | 0.67 | 0.963798 |
Target: 5'- cUCGcugagCGGCAGCGGCGGCacccCGG-CUCa -3' miRNA: 3'- -AGCa----GUUGUUGCUGCCGc---GCCaGAGa -5' |
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2046 | 5' | -54.4 | NC_001347.2 | + | 160643 | 0.67 | 0.963798 |
Target: 5'- gCG-CAGCAcgguACcGCGGCcCGGUCUCUg -3' miRNA: 3'- aGCaGUUGU----UGcUGCCGcGCCAGAGA- -5' |
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2046 | 5' | -54.4 | NC_001347.2 | + | 21630 | 0.67 | 0.966956 |
Target: 5'- cCGUCGccGCAGgccuuUGuCGGCGCGG-CUCUu -3' miRNA: 3'- aGCAGU--UGUU-----GCuGCCGCGCCaGAGA- -5' |
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2046 | 5' | -54.4 | NC_001347.2 | + | 208710 | 0.66 | 0.983803 |
Target: 5'- aCGUCGGCcACcaGCGcCGUGGUCUCg -3' miRNA: 3'- aGCAGUUGuUGc-UGCcGCGCCAGAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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